DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bsf and mma-1

DIOPT Version :9

Sequence 1:NP_523596.2 Gene:bsf / 35100 FlyBaseID:FBgn0284256 Length:1412 Species:Drosophila melanogaster
Sequence 2:NP_506151.1 Gene:mma-1 / 179724 WormBaseID:WBGene00007587 Length:1058 Species:Caenorhabditis elegans


Alignment Length:1301 Identity:239/1301 - (18%)
Similarity:438/1301 - (33%) Gaps:405/1301 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 GFTRNVL--------VNSVRENETSNLLNNAPCMCGQFQNG-------------FATNAAAKAEL 59
            |.:||.|        ::|.....|.|.....|....|.|:.             |.|..:|: ::
 Worm     3 GLSRNGLRSLARRRGLSSAAAQTTKNTATPPPLKQQQEQSNDGRKNFMNKTGKPFITTTSAE-QI 66

  Fly    60 SLDK---------QIRRLDQDVRRI---GRISRRDLEEV---LDEIRSHRTATSSQSLLVIRCCG 109
            .|.|         ::..|.:.|..|   |.:..:.:.::   |:......|.:..|..:::...|
 Worm    67 KLQKKYQEGLESNKLETLHEAVEYIEWRGTVFPQTVSKIIGLLERAADLSTLSDRQLAVLLSIFG 131

  Fly   110 NLVPEELPEVRTALVQEIWKTLNALNVPMDISHYNALLRVYLENEHGFAPTDFLAEIEAKGIEPN 174
            :........:|...::::...|....|.:.:...|.|:...::|.......:.|.:.|..|||.:
 Worm   132 STCDTLSRSLRAQNLEKVESILREKGVVLGLLSRNQLIEAKVDNRSRVDAVEELGKFEESGIELD 196

  Fly   175 RVTYQRLIARYCQQGDIEGATRILEFMRAKSLPVNENVFNSLILGHSQANDLESAKGILGVMMQA 239
            ..:|..|...|.:|.:.:..|.|:..|::..:|:.|:....|:...::..:.|....::      
 Worm   197 GKSYALLCEVYAKQANTKAITDIISHMKSSGIPLTEDHVAQLVYSVARGGNYEHVGRVV------ 255

  Fly   240 GLEPSADTYTT------LLCAFARHGDLAAVKETLAECEQKEIILLDKDLLDIVYTLTVNGNG-- 296
                  ||::|      |.||.||         .:||.|:.|                 .|.|  
 Worm   256 ------DTFSTSMNVVRLRCAAAR---------AIAEREKNE-----------------QGRGGF 288

  Fly   297 ---EHVDDVLTKLRL-SPGFNQDAVNVILRLVNKGHEDVGLKLLR---VMPRSSRVNGEPVDVGA 354
               |.:..:.|..:| |...|...:||.:.|:..|..| ...||.   ::..|....|:.     
 Worm   289 EVTEMIRAIPTTAKLHSLENNAYVLNVFMDLIENGQFD-AFNLLSSYLIVAESGSTLGDN----- 347

  Fly   355 FFIRQMVKANRPVEKILSICKSLQSEGLNPKALTIATEAGLTNGVINNALPLLQEMKNAGLPIRQ 419
                   |.|.||   ::..|||.|||...:|:.:                              
 Worm   348 -------KLNLPV---VARAKSLLSEGSLEEAIAL------------------------------ 372

  Fly   420 HYFWPLICSAESNQ--VLEIVRRMQQEFSVFPNSETVRDYVIPNLKEKNWERIVTSLRDAGVPNS 482
               :..|..:.||:  |.::.|::::|......|..:::|:          ::||...:.|:   
 Worm   373 ---YSCIHPSYSNEFFVQKLNRQLEEELKSITTSHDLQNYL----------KVVTLAENKGL--- 421

  Fly   483 TAVTSAVYSALVTHQIAEAAKIMEKNRAYYVPFLFKQPLILALSHTNDYASFIRCV--------- 538
              :||| ...|:|        :..||:.         ||.:.:......|..||.:         
 Worm   422 --ITSA-NEFLIT--------VCAKNQV---------PLFVDVFDHVQQAGDIRNIFGQNPNLKR 466

  Fly   539 ---RQIHEGLQFRQGKDEEVEQVEGVAAV---PTERITPD-------------------VVGAIV 578
               ||:.:.|.......|:...:..||:|   |:.|.||:                   |:.|:.
 Worm   467 SIGRQLAQHLIKTASPSEKAALIAKVASVMFAPSTRETPEDSHGVFQIMYKIVSKDVKLVLPALD 531

  Fly   579 QEATTYF--RRDRG-ATLEKILKGLVKQGLSISSDKATQLSEQLGSELTPKISELLGKLSSGELE 640
            ....|.:  :|:.| |.:.::|....:..|:|...:....|.:||.....::..||.:....:.|
 Worm   532 LMTNTVWHEKREFGTAIVHQLLHSDKEDHLAIEKLRVLLESNKLGQLTVFRLHGLLTRFLMADKE 596

  Fly   641 PVPLPNSGKRSLDSLSIN---ELERFIVNVEGKGENANNIKRQLLNACFRSQNLEKTLQVIE--- 699
                 |..|.....|:::   |..|..:...|:     |:.:.|.|.........|.:|::|   
 Worm   597 -----NRLKLVARILALDFPPEAARTSLKFGGR-----NLAKFLSNEMITLDMAAKIVQLLEDDP 651

  Fly   700 --KLEAEKFQIPVGIYAQLIDLNTHHKKSSEALEIYGKLKAKDATFQLDNLKAVRLADLLLQEER 762
              :|..|          :|.|.....|.|.|..|:.|||: |.||.|  ..:|..:.:||.:   
 Worm   652 RVQLNNE----------ELTDARNVLKSSPEKAELLGKLR-KSATMQ--RWRATDVNELLKE--- 700

  Fly   763 VDAAFKILEENKKEVPVAEAEGSYNYMSTVWRILNSLAEAGQPERLRKLFDVLVGANYIVPTNVL 827
                ......:.|||.|...:          |::...|...|.:.|    |.||        |||
 Worm   701 ----LSNFSNDVKEVVVLSLK----------RVILQKALTEQNDDL----DFLV--------NVL 739

  Fly   828 LGPLIKVHLVKDDIPKAIEAFEEICQKYKSTPWKNELACRLIQKEDAANLQKLTD----LSTGIH 888
                          ..:||..::.|..|..|..|| |..:.:.|..:.|...|.|    :.:| |
 Worm   740 --------------EHSIEWKKDNCPGYLKTLCKN-LESKTLSKAVSENNMVLADRIWQMRSG-H 788

  Fly   889 GEVNSLYDLVFSFVECGRVRQARKILETPGLRT-----RPQRINSACDRYK--NEGLLQPLEGLI 946
            ...:.|..........|:|.:|.::.|.  ||.     |||.:.....|.|  ..|.:..|.|.:
 Worm   789 PTADVLLSYASRLFVNGQVERADEVCEE--LRNSSQIIRPQTLEKMGRRLKGVESGKMNELAGYL 851

  Fly   947 EATKDLGH------------------IDRNKIYYTLLLSYDKADEAEKALGLWTKMQEENVTPND 993
            :.:.:|..                  |:||.:...|.::.::.:.:.:|.| ...:..|.:..||
 Worm   852 KKSFNLRENDARRVVLQAKTDQLNQLIERNDLPGALRMAVEETNASNRAFG-QVPIMIEAIKRND 915

  Fly   994 AFLLKLAEILSKK-------NIDVPFVVPETQNEQAKAKKSKAKDATTTEAA-----TETAKVAE 1046
            ...|:....:.:.       |:::.:.:..:.|.| :|:....:.....|:.     |..|..:|
 Worm   916 RQTLESVHTMVRSAHSSDMANVNLAYALIHSNNMQ-RARSLIERQNLNIESRVLQYFTTLASASE 979

  Fly  1047 QPKEKAAKKEPAKTETAKPPKTASHLSGFRKAIQANDPDAAISHKQSVLSGEKIGALDTSRLIEL 1111
            .|:                                      :.....::...:...||.:.|:||
 Worm   980 NPR--------------------------------------LLKDMFIVFNGRASTLDLNNLLEL 1006

  Fly  1112 LVRADRLTEATKYVEELLGDKLHPQPKIFKFYLNKIAAAGDLETMQRIGQQLNDE----QKRLIS 1172
            ..|                               |:....|:|::|.:..::...    |.:|.:
 Worm  1007 ATR-------------------------------KLWNINDIESLQELSNEIETTSFPLQNKLRT 1040

  Fly  1173 F 1173
            |
 Worm  1041 F 1041

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bsfNP_523596.2 PPR_2 139..187 CDD:289786 11/47 (23%)
PPR repeat 142..169 CDD:276811 5/26 (19%)
PPR_1 169..202 CDD:289614 9/32 (28%)
PPR_2 173..222 CDD:289786 10/48 (21%)
PPR repeat 177..204 CDD:276811 7/26 (27%)
PPR repeat 210..239 CDD:276811 3/28 (11%)
PPR_2 213..257 CDD:289786 8/49 (16%)
PPR repeat 245..274 CDD:276811 11/34 (32%)
Pterin_binding <456..>543 CDD:294150 18/98 (18%)
PPR repeat 681..704 CDD:276811 6/27 (22%)
PPR repeat 710..739 CDD:276811 9/28 (32%)
PPR repeat 780..818 CDD:276811 7/37 (19%)
PPR repeat 825..854 CDD:276811 6/28 (21%)
mma-1NP_506151.1 PRK04778 <693..954 CDD:179877 60/309 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005169
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46669
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3680
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.130

Return to query results.
Submit another query.