DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ncm and AT1G52325

DIOPT Version :10

Sequence 1:NP_609877.2 Gene:ncm / 35099 FlyBaseID:FBgn0086707 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_683421.1 Gene:AT1G52325 / 841663 AraportID:AT1G52325 Length:145 Species:Arabidopsis thaliana


Alignment Length:265 Identity:72/265 - (27%)
Similarity:103/265 - (38%) Gaps:122/265 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   721 SSLDYEECAHKLMKMQLKPGQEIELCHMFLDCCAEQRTYEKFYGLLAQRFCNINKIYIPPFEEIF 785
            ||||:||..|||:|::|:.||.:|||.|.|:||.|::||..||                      
plant     2 SSLDFEEAGHKLLKIRLEQGQGMELCVMVLECCTEEKTYRSFY---------------------- 44

  Fly   786 KDTYQTTHRLDTNRLRNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYM 850
                                                      .:|:||||.||:|.||.:|:|.:
plant    45 ------------------------------------------VEDSTSSSLIFLKTLFLQLSELL 67

  Fly   851 GLGKLNAKLKDDVLVESIAGLFPKDNPRNTRFSINFFTSIGLGGLTDDLRRFLKNAPKSVPAINA 915
            .:..||.||:|..:.|:...:||||:.:||.|||.|||.|||||:|..||:.:            
plant    68 RIKLLNEKLQDPTMEETFESIFPKDHRKNTLFSIIFFTKIGLGGITQTLRQLI------------ 120

  Fly   916 EILANAGGNPFRDGSAPAGNTKVAPSSSSSSSSSSDTDSEDSSEEDSSSDSSSESSSSDSSSEPK 980
                                           :...:|||||...::...               |
plant   121 -------------------------------AKRKETDSEDELRDEMVM---------------K 139

  Fly   981 KKRKR 985
            ::|||
plant   140 RRRKR 144

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncmNP_609877.2 PTZ00121 <50..>334 CDD:173412
MIF4G 421..602 CDD:214713
MA3 711..817 CDD:397128 25/95 (26%)
PRK12678 1119..>1311 CDD:237171
AT1G52325NP_683421.1 MA3 2..>44 CDD:413424 23/41 (56%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.