DRSC/TRiP Functional Genomics Resources

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Protein Alignment ncm and let-858

DIOPT Version :9

Sequence 1:NP_609877.2 Gene:ncm / 35099 FlyBaseID:FBgn0086707 Length:1330 Species:Drosophila melanogaster
Sequence 2:NP_496363.1 Gene:let-858 / 174689 WormBaseID:WBGene00002957 Length:897 Species:Caenorhabditis elegans


Alignment Length:1077 Identity:427/1077 - (39%)
Similarity:606/1077 - (56%) Gaps:194/1077 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   137 ASSVTKELNSPKAQEENAARELEERRKDEEQPVTTNGSSKESPVEAAAETVKPPTADHIEEGEIT 201
            :||.::...:|||..|.  || ||.::..|||.|...||::|    |:.:..|            
 Worm     2 SSSRSQSPETPKAASEE--RE-EEEKESSEQPDTPKTSSEKS----ASRSQSP------------ 47

  Fly   202 DKDEDDLPTKEEKKAVASKSPPKETQRKQSRSPDGKRR--RPRS-SSRSPSPSSRRRRRSRSKGS 263
                      .|.:.|:.::...|.|.|.....||..:  .|.| .||..||:.:|.:.:|    
 Worm    48 ----------RESREVSQETETSENQEKIKEKDDGDDQPGTPNSYRSRETSPAPKRSKETR---- 98

  Fly   264 RTRSRSKSPIRRRSNSLERRRVERQRRHEERDKRDEERAKEREKRHQKGEPTSSRRRDDSREKKR 328
            .:.|..|||:|.|                                        |.||..:|...|
 Worm    99 ESESPEKSPVRSR----------------------------------------SPRRSSARSPSR 123

  Fly   329 SPERKRDRSSSTPKSKSSKTPRHTETTETNADNETVTEPAAKITERQRKTVDVLTSRTGGAYIPP 393
            ||.|:|:|||...:|:                     |||....:::::.:|:|.:|||||||||
 Worm   124 SPRRRRERSSERKQSE---------------------EPAPLPEKKKKEPLDILRTRTGGAYIPP 167

  Fly   394 AKLRMMQSQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNIAIITRELLRENIVRGRGLLSRSI 458
            ||||:||.||:||.|..|||:.||.:||.|||.:|:||..|:..|.||||:||::|.:|||.|.|
 Worm   168 AKLRLMQQQISDKQSEQYQRMNWERMKKKIHGLVNRVNAKNLVQIVRELLQENVIRSKGLLCRDI 232

  Fly   459 IQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLVIQFRRAFRRNDKMVCMSATRFIGHLVNQ 523
            |||||.||.|::|||||.::||||||::|||||:||::||:|:|||||:.|.::..:||.||:||
 Worm   233 IQAQAFSPGFSNVYAALAAVINSKFPHVGELLLRRLIVQFKRSFRRNDRGVTVNVIKFIAHLINQ 297

  Fly   524 RVAHEILALEILTLLVETPTDDSVEVAIAFLKECGMKLTEVSSKGIGAIFEMLRNIL-----HEG 583
            :||||:|||||:.|::|.|||||||||||||||||.||.|::...:.::::.||.||     .|.
 Worm   298 QVAHEVLALEIMILMLEEPTDDSVEVAIAFLKECGAKLLEIAPAALNSVYDRLRAILMETERSEN 362

  Fly   584 KLDKRVQYMIEVLFQIRKDGFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVFKFDDNY 648
            .||:|:|||||...|||||.|..:.||:.:|:|:||:||..|.:.|::|.:.|:.|||||.|..:
 Worm   363 ALDRRIQYMIETAMQIRKDKFAAYPAVIEDLDLIEEEDQIIHTLNLEDAVDPENGLNVFKLDPEF 427

  Fly   649 AENEDKYKGLSREILGSDDGSSSGSGSGSDSDSDSDGESGSDAEK-KAEAGDIIDSTETNLIALR 712
            .:||:.|:.:.:||:|:.|.|....|     |...|.|.|||.|: ..:..:|||:|:.||.|.|
 Worm   428 EKNEEVYEEIRKEIIGNADISDEDGG-----DELDDEEEGSDVEEAPKKTTEIIDNTDQNLTAFR 487

  Fly   713 RTIYLTINSSLDYEECAHKLMKMQLKPGQEIELCHMFLDCCAEQRTYEKFYGLLAQRFCNINKIY 777
            |.:|||:.|||||:|.||||:||::....:.|||.|.:||||:|||||:|||:|.:|||.:...|
 Worm   488 REVYLTMQSSLDYQEAAHKLLKMKIPDSMQNELCAMLVDCCAQQRTYERFYGMLIERFCRLRLEY 552

  Fly   778 IPPFEEIFKDTYQTTHRLDTNRLRNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKIL 842
            ...||::.:|||.|.||:|..:|||:::..||||.||||.|.:|..:::.|:|||||.||:||.:
 Worm   553 QQYFEKLCQDTYSTIHRIDITKLRNLARLIAHLLSTDAIDWKILADMKMTEEDTTSSGRIYIKYI 617

  Fly   843 FQELAEYMGLGKLNAKLKDDVLVESIAGLFPKDNPRNTRFSINFFTSIGLGGLTDDLRRFLKNAP 907
            |.||.|.||:.||::::.|..|.....||||:.||.:.||||||||.|||||||.:||.:|....
 Worm   618 FNELVEAMGMVKLHSRVTDPTLAHCFVGLFPRTNPNSARFSINFFTMIGLGGLTLELREWLAKGL 682

  Fly   908 KSVPAINAEILANAGGNPFRDGSAPAGNTKVAPSSSSSSSSSSDTDSEDSSEEDSSSDSSSESSS 972
            |....:..::.|.                    |||.|||||..:||.|||:.|.||||||:|||
 Worm   683 KKKKGMLDQLKAE--------------------SSSDSSSSSDSSDSSDSSDSDDSSDSSSDSSS 727

  Fly   973 SDSSSEPKKKRKRKDKDKKKSKKATKEKSKKTKNKKKKKKAEKEQEKEKEKQRKSKKEKEKDKKR 1037
            | |.|||:..                        ||||||..:|..|:|||:...:::: .||:.
 Worm   728 S-SESEPEPP------------------------KKKKKKNSEESSKKKEKENIGRRDR-GDKRA 766

  Fly  1038 KKEEKKAAKKKSKHRRKSQESSDSSGSEDSDKSTSESSDSSNSSSDESDAEPQAKIKRQEHVEKN 1102
            ::...::.:.|.|.||:.|:|.::...|..|.....|.|.....||:.|               .
 Worm   767 ERHRDQSVENKDKDRRRRQDSDENRRPERGDDRKDRSKDRRRQDSDDED---------------R 816

  Fly  1103 KFRGRTQDSDEFNLEGPGSKNRFQPNGNGQRRRDNSTGRERNRENSSYDRERNRGNSSYDRE--- 1164
            |.|.|.:||                   |:|||.:...|:||::..  |...:|.:.|.|||   
 Worm   817 KGRERREDS-------------------GERRRGDRDRRDRNKDQE--DHREDRRDRSKDREDRR 860

  Fly  1165 -RKRGNSSYDRERNRESSYDKERKNRNAVAHDRQRKR 1200
             |:|.:|..||:..|:.|.::..:.|...:.||:|:|
 Worm   861 DRRRHDSDDDRKTRRDRSEERGGRRREVESDDRRRRR 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ncmNP_609877.2 MIF4G 421..602 CDD:214713 109/185 (59%)
MA3 711..817 CDD:280933 57/105 (54%)
PHA02896 <1107..1300 CDD:165222 28/98 (29%)
let-858NP_496363.1 MIF4G 195..382 CDD:214713 110/186 (59%)
MA3 486..592 CDD:280933 57/105 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166451
Domainoid 1 1.000 192 1.000 Domainoid score I1899
eggNOG 1 0.900 - - E1_KOG2140
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 723 1.000 Inparanoid score I324
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53878
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002777
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101743
Panther 1 1.100 - - LDO PTHR18034
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R268
SonicParanoid 1 1.000 - - X1867
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.830

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