DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fas3 and cadm2a

DIOPT Version :10

Sequence 1:NP_001097174.1 Gene:Fas3 / 35097 FlyBaseID:FBgn0000636 Length:577 Species:Drosophila melanogaster
Sequence 2:XP_005155320.1 Gene:cadm2a / 793954 ZFINID:ZDB-GENE-040426-1614 Length:442 Species:Danio rerio


Alignment Length:487 Identity:103/487 - (21%)
Similarity:161/487 - (33%) Gaps:156/487 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 LNEGDRTELLCRYGRSINYCRIEIPGEQKVLNLSPEWSKTPGFT-YFG------------AGLTA 82
            :.||....|.||...:.              |.|.:||.....| :||            ...|:
Zfish    49 VTEGGTANLTCRVEHND--------------NTSLQWSNPAQQTLFFGDKKALRDNRIELVRATS 99

  Fly    83 GQCGVSIERVKASNNGQVKCSLGVEGEELSGTIDLVVALRPQQPIIELLSRPNREGYFNEGTEFR 147
            .:..:||..|..|:.|...|||.....:.:.....|:.: |::|.|..|::|     ..||....
Zfish   100 QELTISISEVSLSDEGLYTCSLFTMPVKTAKAFLTVLGV-PKKPEINGLTKP-----VLEGDHIT 158

  Fly   148 ARCSVRDGRPPANISWYIDNMPANKRTTPLEVMSS--TNDNVELSTSVQEIQWHLSPEDSNRKLV 210
            ..|.....:|.|::.|:.:.|         ||..:  .|.:.:..|....::.|::.:|......
Zfish   159 LTCVTSGSKPAADVRWFKNEM---------EVKGAKEVNASGKTFTVKSSLRLHVNRDDDGVAYT 214

  Fly   211 CRSHHQTDRESVPPQEAAYIINVRYAPV----HQPDAAVYGLYLEHTAIVNITIRASPQP-KIEW 270
            ||..|..  .:...:|...::.|.|||.    ...:....|.||:    :....:.:|.| .:.|
Zfish   215 CRVDHVA--LTATHEETTQVLEVHYAPYVEIRQSTNVPQEGQYLK----LQCVPKGNPSPDPVLW 273

  Fly   271 TIDGA-------IVGQGR---------TD-GRYSAYEPQYLGNDEYNVTLAI------------- 305
            |.||.       ::..||         || |.|......:||.......|.|             
Zfish   274 TKDGGELPDMDRMIVDGRDLTFTSLNKTDNGTYRCEATNHLGTSHAEFKLVIYDAPTTPSPSTTS 338

  Fly   306 AGLTLEDTT----------KIYNLRASNEL-GLTDYQVRISSSSKPPSSSLDVAAIVGIVVAVAV 359
            ...||.|||          .:...|..||| ..||:                  |::|.:|||.|
Zfish   339 PAPTLPDTTGPLDSKQLNSAVTGNRDPNELKRATDH------------------ALIGGIVAVVV 385

  Fly   360 LVLVVLLIVFARATGRWCFGGKSIKTPTNETQIDKQLELGAQQNHGQNVALLETPNGITLLGASK 424
            ...:.|:||..|...|  ..|..:   |||.:       ||.          :.|:..|.:    
Zfish   386 FATLCLIIVLGRYLAR--HKGTYL---TNEAK-------GAD----------DAPDADTAI---- 424

  Fly   425 LREVNGNGNGNGQQDRLSVERRHHDEDDSFEY 456
               :|.:||             |...::..||
Zfish   425 ---INADGN-------------HAHAEEKKEY 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fas3NP_001097174.1 C2-set_2 141..222 CDD:400489 16/82 (20%)
Ig strand B 146..150 CDD:409353 0/3 (0%)
Ig strand C 160..164 CDD:409353 0/3 (0%)
Ig strand E 194..198 CDD:409353 0/3 (0%)
Ig strand F 208..213 CDD:409353 1/4 (25%)
Ig strand G 226..229 CDD:409353 1/2 (50%)
Ig 253..326 CDD:472250 25/114 (22%)
cadm2aXP_005155320.1 IgV_1_Necl-3 41..136 CDD:409498 21/100 (21%)
Ig strand A 41..44 CDD:409498
FR1 42..60 CDD:409498 3/10 (30%)
Ig strand A' 45..51 CDD:409498 0/1 (0%)
Ig strand B 53..61 CDD:409498 2/7 (29%)
CDR1 61..66 CDD:409498 0/18 (0%)
FR2 67..74 CDD:409498 3/6 (50%)
Ig strand C 67..73 CDD:409498 2/5 (40%)
CDR2 75..86 CDD:409498 3/10 (30%)
Ig strand C' 77..81 CDD:409498 1/3 (33%)
Ig strand C' 83..86 CDD:409498 0/2 (0%)
FR3 87..122 CDD:409498 8/34 (24%)
Ig strand D 91..98 CDD:409498 0/6 (0%)
Ig strand E 101..107 CDD:409498 1/5 (20%)
Ig strand F 114..122 CDD:409498 3/7 (43%)
CDR3 123..126 CDD:409498 0/2 (0%)
Ig strand G 126..136 CDD:409498 0/9 (0%)
FR4 128..135 CDD:409498 0/6 (0%)
Ig 135..235 CDD:472250 23/116 (20%)
Ig strand B 157..161 CDD:409353 0/3 (0%)
Ig strand C 171..175 CDD:409353 0/3 (0%)
Ig strand E 198..202 CDD:409353 0/3 (0%)
Ig strand F 212..217 CDD:409353 1/4 (25%)
Ig strand G 228..231 CDD:409353 1/2 (50%)
Ig_3 239..312 CDD:464046 16/76 (21%)
4.1m 395..413 CDD:128590 6/29 (21%)
Blue background indicates that the domain is not in the aligned region.

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