DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptp36E and clr-1

DIOPT Version :9

Sequence 1:NP_001286033.1 Gene:Ptp36E / 35091 FlyBaseID:FBgn0267486 Length:682 Species:Drosophila melanogaster
Sequence 2:NP_001022209.1 Gene:clr-1 / 3565419 WormBaseID:WBGene00000548 Length:1444 Species:Caenorhabditis elegans


Alignment Length:695 Identity:191/695 - (27%)
Similarity:301/695 - (43%) Gaps:128/695 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 KLEARD--ENNSLSKTIPNGPID-------IRHFLKLCDLRRKFPVLYKLEFQTAAKVESNTCRH 119
            |:.::|  |...|.:|....|:|       :||        |....|:..|:::....:.:|.. 
 Worm   789 KMTSKDVVERTLLKQTFGAIPVDDLPTEYVVRH--------RDTDFLFAQEYESLPHFQLDTVA- 844

  Fly   120 ALKKNNLEKNQNPKCIPYDYNRVVLEKVGGLQDSDYVNASYVDSLLKPNAYIVTQGPVEETVQAY 184
            :.:|.|..||:......:|..||.|:|:.|...|||:||:::.|..:...:|..|.||:.|:..:
 Worm   845 SNRKENAIKNRYNDIRAFDDTRVKLKKINGDDYSDYINANFIKSWKEKKLFIAAQAPVDATIGDF 909

  Fly   185 WRMVWQENISAIVMLTKTFDFAKVMCHQYWPPNMEVHEQYGDIFINIVREEQLANFH----IRTF 245
            |||||::....|||:....:..:..|.:|||.  |...:||||.:    |....:||    ||.|
 Worm   910 WRMVWEQESYLIVMVANLTEKNRQQCAKYWPD--EQITRYGDIIV----EPASFSFHSDYAIRAF 968

  Fly   246 RLYKMNE---------------------KQEVTDERLILQFHYTEWYSHSCP-FSNALLEFRRRV 288
            .:..:.|                     .|...:.|.|||:|:|.|..:..| .|..||.|..|:
 Worm   969 DIAHIGECGPDVIPNGNGVEYANVPIVKGQFANNSRRILQYHFTNWNDYKAPECSTGLLRFMYRL 1033

  Fly   289 R-LVVGNIIKDEDDMRGPILVHCSDGGGRSGVYMSIDANLELAEEEECFNVFGYLKKLRQSRKGL 352
            | |...|        ..|:::|||.|.||:|.::|||:.|:....|:..|:|.::..||:.|..:
 Worm  1034 RELPQFN--------NSPVVIHCSAGVGRTGTFISIDSMLDQCLAEDKANIFEFVCNLRRQRNLM 1090

  Fly   353 VENVEQYKFIYDTLEEHIICGKTWFPVSELSD---RLKAKARRNSGTKMNEYQAEYDQICKQTPR 414
            |:::|||.|||..|.|..:.|.|...|.:..|   ||.| :.|:.....|:..:....|   :||
 Worm  1091 VQSLEQYVFIYKALAEWHMYGDTDEDVRDFEDHYQRLCA-SNRDRAVSFNQQSSTNGSI---SPR 1151

  Fly   415 FTIGDCAGGHRADNRE------------------------------KNRDVLCVPPDNFRPYLTS 449
            ..|..........|.|                              |||....||.|.:|..|..
 Worm  1152 VAIVSSRESMTTSNGETGLEEEFKKLERNLTTPLSSNFAAKDENLLKNRYEAAVPFDKYRVILPP 1216

  Fly   450 FQGNAFTDYINSVFVDGYTKPREYIVTEWPMKH-TLGEFWSLVYDQECSAVVVLCQPPSQSQQYP 513
            ..|:|.:.|||:..:.||.  .:||..:.|:.. |..:||.::.||..:.||:|.....      
 Worm  1217 TIGHADSSYINASHIKGYF--FDYIAAQDPVSEGTAFDFWRMIADQNVTTVVMLSDETD------ 1273

  Fly   514 SFWPNKSKMEKYGPV----FSVHYVMSKSYTNI------KQWEFKINKKIVSLTEMMAGVKAPTR 568
              |   |.:|||.|:    ...|:...::..|:      ...:|.|.....|:.: ...:.|...
 Worm  1274 --W---SDVEKYWPIDGSGTECHFGSERNSVNVTCVSEEHHQDFIIRNLSYSMKD-NESMPANQE 1332

  Fly   569 TVQLFQLTCWPMGHKVPSSTNSLVYLMNMVEIWRNKVDYG---PVCVVSPDGRSRAGVY-CAANA 629
            .|| :..|.||....||.|.|||:.|:.|| :.|.....|   |:.|...:|.|.:|:: |.:..
 Worm  1333 VVQ-YSYTGWPSDSIVPKSANSLMNLIEMV-LQRQSSLMGSQAPIVVHCRNGSSESGIFICISLL 1395

  Fly   630 CIEQVIQHGEVDVFQAVKTVRRHRPQLVENMTEYKYCYDLVLHYV 674
            .:.|..:. .:||||.||.::.|||.:.....:|.:||..:..|:
 Worm  1396 WLRQKAEQ-RIDVFQTVKGLQSHRPMMFTRFEQYSFCYRALADYI 1439

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ptp36ENP_001286033.1 Y_phosphatase 125..368 CDD:395053 87/269 (32%)
Y_phosphatase 428..671 CDD:395053 75/287 (26%)
clr-1NP_001022209.1 IG_like 175..258 CDD:214653
FN3 403..523 CDD:238020
PTPc 827..1106 CDD:214550 91/293 (31%)
PTPc 853..1106 CDD:238006 86/266 (32%)
PTPc 1169..1437 CDD:214550 73/284 (26%)
PTPc 1198..1437 CDD:238006 73/255 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.