DRSC/TRiP Functional Genomics Resources

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Protein Alignment JMJD4 and jmjd6

DIOPT Version :9

Sequence 1:NP_001286031.1 Gene:JMJD4 / 35089 FlyBaseID:FBgn0032671 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001016203.1 Gene:jmjd6 / 548957 XenbaseID:XB-GENE-966778 Length:403 Species:Xenopus tropicalis


Alignment Length:334 Identity:84/334 - (25%)
Similarity:122/334 - (36%) Gaps:104/334 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LLQLHPEEVVETDPQLPEEIERCSGLDY--NDFFWRYMHKNIPVIIANVSNDWECQ-NWTVGQ-- 70
            |..|:|..|       .:.:||.....:  .:|..||.....||:|.|.:.||..| .||:.:  
 Frog    34 LYSLNPSVV-------RDNVERVDAAHFTIEEFIERYEKPYKPVVILNATADWPAQEKWTLERLK 91

  Fly    71 --------SSPESRDLNSNPSASSINFDYLKTKISDGPVPVANCNSSYFNSHTKLELNFHDYLAK 127
                    ...|..|..|.........:||:....|.|:.:  .:||| ..|.|.:....|    
 Frog    92 RKYRNQKFKCGEDNDGYSVKMKMKYYIEYLEGTRDDSPLYI--FDSSY-GEHPKRKKLLED---- 149

  Fly   128 WRSSIESQSSAAWTSAEVNSNVAPASGDNLYLKDWHLAAQMPGYNFYKVPKYFASDWLNEQLIQQ 192
                                                          |:|||||..| |.:...::
 Frog   150 ----------------------------------------------YEVPKYFRDD-LFQFAGEK 167

  Fly   193 GKDDYRFVYMGPKNSWTSYHADVFGSFSWSTNIVGLKKWLIMP---PGEELKL-NDRLGN----- 248
            .:..||:..|||..|.|..|.|..|:.:|::.:.|.|:|.:.|   |.|.:|: .|..||     
 Frog   168 RRPPYRWFVMGPARSGTGIHIDPLGTSAWNSLVHGHKRWCLFPTNVPRELIKVTRDEGGNQQDEA 232

  Fly   249 ------------LP-FSIDEKMLDEHNVRYYTINQRANEAVFVPSGWFHQVWNLTDTISVNHNWF 300
                        || :..|.|.|:        |.|:..|.||||.||:|.|.||...|:|..|:.
 Frog   233 ITWFTVIYPRTQLPSWPPDFKPLE--------ILQKPGETVFVPGGWWHVVLNLDTAIAVTQNFA 289

  Fly   301 NGCNISMVW 309
            :..|..:||
 Frog   290 SCSNFPVVW 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JMJD4NP_001286031.1 JmjC 172..221 CDD:214721 18/48 (38%)
JmjC 199..299 CDD:202224 39/121 (32%)
jmjd6NP_001016203.1 JmjC 174..288 CDD:334913 39/121 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D369628at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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