DRSC/TRiP Functional Genomics Resources

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Protein Alignment JMJD4 and CG30053

DIOPT Version :9

Sequence 1:NP_001286031.1 Gene:JMJD4 / 35089 FlyBaseID:FBgn0032671 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_725221.1 Gene:CG30053 / 246419 FlyBaseID:FBgn0050053 Length:335 Species:Drosophila melanogaster


Alignment Length:227 Identity:46/227 - (20%)
Similarity:74/227 - (32%) Gaps:71/227 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLLQLHP-----------------EEVVETDPQ------LPEEIERCSGLD---------YNDFF 42
            ||:|:.|                 :.|.|..|.      |.:..:.|.||:         |:...
  Fly    72 VLIQILPLWDWRPYYHAKCLIPRDQSVQEQAPSLGKAETLRQNCDLCEGLEGIGTVSNVSYSSLE 136

  Fly    43 WRYMHKNIPVIIAN--VSNDWECQNWTVGQSSPESRDLNSNPSASSINFDYLKTKISDGPVPVAN 105
            ..::.:..||||.:  :..|.......:.:.||:.  |.|.|...|.|.  |..|:         
  Fly   137 SEHLERGQPVIITDTGLQTDVFSLLEQIEKKSPQW--LTSEPCDVSSNL--LLRKL--------- 188

  Fly   106 CNSSYFNSHTKLELNFHDYLAKWRSSIESQSSAAWTSAEVNSNVAPASGDNLYLKDWHLAAQMPG 170
                 ||....|     |.:..|    :.|:|.:|.....|..........|:|       ..|.
  Fly   189 -----FNLEAAL-----DKIHSW----QGQTSNSWHLQLRNCQKKAVKSSRLFL-------DRPY 232

  Fly   171 YNFYKVPKYFASDWLNEQLIQQGKDDYRFVYM 202
            |....:..|::| ||  ..:.|.|.:...:|:
  Fly   233 YYPLHLAPYYSS-WL--LAVHQQKRNQADIYV 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
JMJD4NP_001286031.1 JmjC 172..221 CDD:214721 7/31 (23%)
JmjC 199..299 CDD:202224 1/4 (25%)
CG30053NP_725221.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR12480
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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