DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Socs36E and socs6

DIOPT Version :9

Sequence 1:NP_523593.5 Gene:Socs36E / 35085 FlyBaseID:FBgn0041184 Length:737 Species:Drosophila melanogaster
Sequence 2:XP_687041.2 Gene:socs6 / 558703 -ID:- Length:519 Species:Danio rerio


Alignment Length:574 Identity:135/574 - (23%)
Similarity:206/574 - (35%) Gaps:141/574 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 QQRQCADGATDDDAAALSADSLNANGQIVNVTLEGGYGEVGVVTNRTAGSSPEAAKTERQPVNNN 163
            ||...|...|.||                  ||.||....|:|.....|...:..|:..:   :.
Zfish    27 QQPTIAAEFTKDD------------------TLFGGCYTKGLVGCDLNGEDEKGHKSRSK---SE 70

  Fly   164 GLAGSVGAAISTLQLHDNHGGNANCPLEADDDDD----------LDESLLRRRRSNSNSRSNIHH 218
            .|.|::...:||.|.....||::  .:.:.||||          .:|...:|...:|:.||    
Zfish    71 SLMGTLKRRLSTKQKAKVKGGSS--AVGSGDDDDTFSSSSVPISFNEVKAQRPLRSSSLRS---- 129

  Fly   219 HHHHHQQQQQQQHEAEVVEYCEVLESLPVSNMLSAGTQHSSKPVSRSNNSNSCCRSRSSKALSMG 283
              ||:.............|.|..:| :.|..|:     ||..|....|...........:.|...
Zfish   130 --HHYSPSPWPFRPVGSEEACIKME-VKVKAMV-----HSPNPSPSLNGIRKEFHDIQLEGLFQD 186

  Fly   284 AATSSASGSASTSVSTSTSSKRRCCKCKCRDAIRGLRDMLPSSSSSVSNKKDAAAVVAMVPRK-- 346
             .:.:.||:...|:                      .|.:|               :.:.|:.  
Zfish   187 -QSETQSGNLHLSI----------------------EDHVP---------------IGLTPQDYI 213

  Fly   347 --SRTADRRSTPPTLGT--SSGGSQRRMQSQRIRNSVAV---PDASHHHHQLIIRITSPGFVVES 404
              :...|....|.:..:  ..|.|...:..|...:|:.:   ||.    |.:   |||...:..|
Zfish   214 QYTMPLDEGMYPDSAQSFCLDGPSPMEVGDQVESDSLHIDQGPDG----HDI---ITSDILMEHS 271

  Fly   405 PNG----GRVTVVTEPAPQSPQTPPRPRPLAT---VAPAGGAGHAGIGAARNMTVHSQID----- 457
            .||    ....|::.....:|...|...||:|   .....|...|.......:..|...|     
Zfish   272 VNGHLADAPAMVLSNSRADTPLFSPSLSPLSTNDIPRTLSGFSSADSHVVERVRHHLNFDPNSAP 336

  Fly   458 ---------------FMHCLVPDLEKITNSSFYWGKMDRYEAEHLLEGKPEGTFLLRDSAQEEFL 507
                           .:..|..:|:|:....:|||.:.|:|||..|...|:|:||:|||:.:.:|
Zfish   337 GVSRVYDSFQSSGPMVVTSLTEELKKLAKQGWYWGPITRWEAEEKLVNLPDGSFLVRDSSDDRYL 401

  Fly   508 FSVTFRKYGRSLHARIEQSGHKFSFDCHDPCVFTAPTVTGLLEH-YKDPACVMF----------- 560
            .|::||..|::||.|||.|..:||| ...|.|....::..|:|| .||.....|           
Zfish   402 LSLSFRSQGKTLHTRIEHSNGRFSF-YEQPDVEGHTSIVDLIEHSIKDSENGAFCYSRSRLPGSA 465

  Fly   561 -FEPCLTIPLHR-RQTFSLQQLSRATIVSNTSYDGINQMELPGRLKSYLKEYHY 612
             :...||.|:.| .|..|||.|.|..|...|..|.|.::.||.::|.||:|.||
Zfish   466 TYPVRLTNPVSRFMQVRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKDYLQEKHY 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs36ENP_523593.5 SH2 463..563 CDD:301589 39/112 (35%)
SOCS 575..626 CDD:295349 17/38 (45%)
socs6XP_687041.2 SH2_SOCS6 357..456 CDD:198250 39/99 (39%)
SOCS_SOCS6 479..519 CDD:239709 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575797
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.