DRSC/TRiP Functional Genomics Resources

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Protein Alignment Socs36E and socs1a

DIOPT Version :9

Sequence 1:NP_523593.5 Gene:Socs36E / 35085 FlyBaseID:FBgn0041184 Length:737 Species:Drosophila melanogaster
Sequence 2:NP_001003467.1 Gene:socs1a / 445073 ZFINID:ZDB-GENE-040801-205 Length:201 Species:Danio rerio


Alignment Length:182 Identity:53/182 - (29%)
Similarity:74/182 - (40%) Gaps:38/182 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   448 RNMTVHSQIDFMHCLVP-----DLEKITN-------SSFYWGKMDRYEAEHLLEGKPEGTFLLRD 500
            |..||..|..|.    |     |.:.|:|       |.||||.|...||...|:.:..||||:||
Zfish    35 RQSTVAFQTHFK----PFNYARDFKIISNTTSMLEESGFYWGPMTVEEAHLKLKKESVGTFLIRD 95

  Fly   501 SAQEEFLFSVTFRKYGRSLHARIEQSGHKF-------SFDCHDPCVFTAPTVTGLLEHYKDPACV 558
            |.|.:..|:::::.....:..||.....||       |||          ::..|||||......
Zfish    96 SRQSDVFFTLSYKAQNGPVSIRINFKNSKFSLTGSKESFD----------SLFKLLEHYISSPKK 150

  Fly   559 MFFEPCLTIPLHRRQTFSLQQLSRATIVSNTSYDGINQMELPGRLKSYLKEY 610
            ....||...|:.     |||||.|..|:.......|:.:.:...||.:|..:
Zfish   151 GLIRPCRKEPVQ-----SLQQLCRRQIMERCDGKDIDCIPVQPILKDFLHAF 197

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs36ENP_523593.5 SH2 463..563 CDD:301589 34/118 (29%)
SOCS 575..626 CDD:295349 11/36 (31%)
socs1aNP_001003467.1 SH2_SOCS1 58..155 CDD:198245 31/106 (29%)
SOCS 161..198 CDD:295349 11/42 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575805
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

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