DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Socs36E and socs6b

DIOPT Version :9

Sequence 1:NP_523593.5 Gene:Socs36E / 35085 FlyBaseID:FBgn0041184 Length:737 Species:Drosophila melanogaster
Sequence 2:NP_955919.1 Gene:socs6b / 322950 ZFINID:ZDB-GENE-030131-1670 Length:532 Species:Danio rerio


Alignment Length:589 Identity:139/589 - (23%)
Similarity:208/589 - (35%) Gaps:171/589 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 DDAAALSADSLNANGQIVNVTLEGGYGEVGVVTNRTAGSSPEAAKTERQPVNNNGLAGSVGAAIS 174
            |.||:.||:.          :|.||.....:|::.......:.:|...:   :.||.|::...:|
Zfish    29 DLAASFSAED----------SLFGGCYSKDLVSSDLDNEDEKRSKVRSK---SEGLMGTLKRRLS 80

  Fly   175 TLQLHDNHGGNAN-CPLEADDDDDLDES----LLRRRRSNSNSRSNIHHHHHHHQQQQQQQHEAE 234
            ..|.....||:.: |.:   |||....|    .|...:|..:|||...|.||:            
Zfish    81 AKQKPKVKGGSPSVCSI---DDDTFSSSSAPISLSDLKSQRSSRSTSVHSHHY------------ 130

  Fly   235 VVEYCEVLESLPVSNMLSAGTQHSSKPVSRSNNSNSCCRSRSSKALSMGAATSSA---------- 289
                              :.|....:||    ||...|.....|||...:..||.          
Zfish   131 ------------------SPTPWPLRPV----NSEETCIKMDVKALMNSSDPSSTLNSVHQDFLD 173

  Fly   290 ----SGSASTSVSTSTSSKRRCCKCKCRD----------AIRGLR-------------DMLPSSS 327
                .|.:|.|...:|.........:..|          .:.||.             .:.|...
Zfish   174 LQREFGESSDSFRITTRVPDHHSATQNGDLHLDMDEHVPVVLGLAAQDYIQYTMPLDDGLYPDDE 238

  Fly   328 SSVSNKKDAAAVVAMVPRKSRTADRRSTPPTLGTSSGGSQRRMQSQRIRNSVAVPD---ASHHHH 389
            .|.|...||...:.:||:                |.|........:.|...:..||   .|...:
Zfish   239 GSRSFCLDATTPMDIVPQ----------------SEGCGSLHQDEEPIDQDLLSPDIFMESSSVN 287

  Fly   390 QLIIRITSPGFVVESPNGGRVTVVTEPAPQSPQTPPRPRPLATVAPAGGAG-HAGIGAARNMTVH 453
            ||.:...:...     .|.|:     .||.||..||.|......:.:|.|| ||.:  |..:..|
Zfish   288 QLFLNTANVLL-----QGSRL-----EAPLSPLLPPLPDSYLQRSFSGFAGTHAQV--AERVMHH 340

  Fly   454 SQID--------------------FMHCLVPDLEKITNSSFYWGKMDRYEAEHLLEGKPEGTFLL 498
            ...|                    .:..|..:|:|:....:|||.:.|:|||..|...|:|:||:
Zfish   341 LNFDPNSAPGVQRVYDAVQNSGPMVVTSLTAELKKLAKQGWYWGPITRWEAEEKLTNLPDGSFLV 405

  Fly   499 RDSAQEEFLFSVTFRKYGRSLHARIEQSGHKFSFDCHDPCVFTAPTVTG------LLEH-YKDPA 556
            |||:.:.:|.|::||...::||.|||.|...|||       :..|.:.|      |::: .||..
Zfish   406 RDSSDDRYLLSLSFRSQTKTLHTRIEHSNGSFSF-------YEQPDIEGHVSIVDLIDNSVKDSE 463

  Fly   557 CVMF------------FEPCLTIPLHR-RQTFSLQQLSRATIVSNTSYDGINQMELPGRLKSYLK 608
            ...|            :...||.|:.| .|..|||.|.|..|...|..|.|.::.||.::|.||:
Zfish   464 NGAFCYSRSRLPGSATYPVRLTNPVSRFMQVRSLQYLCRFVIRQYTRIDLIQKLPLPNKMKDYLQ 528

  Fly   609 EYHY 612
            |.||
Zfish   529 EKHY 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Socs36ENP_523593.5 SH2 463..563 CDD:301589 36/118 (31%)
SOCS 575..626 CDD:295349 17/38 (45%)
socs6bNP_955919.1 SH2_SOCS6 370..469 CDD:198250 36/105 (34%)
SOCS_SOCS6 492..532 CDD:239709 16/39 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170575799
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4566
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.740

Return to query results.
Submit another query.