Protein Alignment rdo and LRX2

DIOPT Version :9

• Sequence 1: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Sequence 2: NP_176434.2
• Gene: LRX2 / 842542
• AraportID: AT1G62440
• Length: 786
• Species: Arabidopsis thaliana
• Alignment Length: 534
• Identity: 111/534 - (20%)
• Similarity: 187/534 - (35%)
• Gaps: 167/534 - (31%)

  Fly   247 RDVKRLTKVL---LDGNQLSVVVDQLFRMQKSLNHLDLSYNR-LAKVPNDSFLQLTNLTFLDLSY 307
            |::..||.:.   |:.|:....|...|:..|.|..||||.|| :.|.|| ..|.|.:|.||||.|
plant   119 RELGLLTDLALFHLNSNRFCGEVPLTFKHMKLLFELDLSNNRFVGKFPN-VVLSLPSLKFLDLRY 182

  Fly   308 NKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQ------L 366
            |:.....|..:                         |:..:...||..::..|. ||:      :
plant   183 NEFEGSIPSKL-------------------------FDKELDAIFLNHNRFMFG-IPENMGNSPV 221

  Fly   367 THLAIADM---GTMP--VGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGIS 426
            :.|.:||.   |.:|  :||:.  |.|..:.:|.::|.......|...:.:...|:|.|:|.|..
plant   222 SALVLADNDLGGCIPGSIGLMG--KTLNEIILSNDNLTGCLPPQIGNLKNVTVFDISFNRLSGPL 284

  Fly   427 EDTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQLQWKWDTYPICFLPKSLRGAEINNLDING 491
            ..::..::.:..:.:.||          :...|:               |.|:  .:::||: |.
plant   285 PSSIGNMKSLEQLNVANN----------RFTGVI---------------PSSI--CQLSNLE-NF 321

  Fly   492 LHTCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTRED 556
            .::...|..|..:..|....|.:.:|.:|                      |..       .:||
plant   322 TYSSNFFTGDAPRCVALLGDNVVVNGSMN----------------------CID-------GKED 357

  Fly   557 HLNGSESKCLEKNLEATTITTLG--NGSSP------TTTTTLTLATSP----------AAPNGPK 603
            ..:..|  |......:...:..|  |..||      .:.|...|...|          |.|..|.
plant   358 QRSSKE--CSSPASRSVDCSKFGCNNFFSPPPPSFKMSPTVRVLPPPPPSSKMSPTFRATPPPPS 420

  Fly   604 TNGQGLSLSPANGSTPVHGISDDKGKEINFTF-----PVDDRVCTIDELMPSPPPPPQQHPHPNM 663
            :     .:||:..:||     .....:::.:|     |...::....:..|.|||||:..|.|
plant   421 S-----KMSPSFRATP-----PPPSSKMSPSFRATPPPPSSKMSPSVKAYPPPPPPPEYEPSP-- 473

  Fly   664 GSLMYSVSHSPNSATTLAAVAAAATVIPPGAPS---------HSSMPTPTPTPAEAVVVVLPPP- 718
                      |..::.::....|....||.:|.         :||.|.|:|:|....:...|||
plant   474 ----------PPPSSEMSPSVRAYPPPPPLSPPPPSPPPPYIYSSPPPPSPSPPPPYIYSSPPPV 528

  Fly   719 ---------PLPPQ 723
                     |.||:
plant   529 VNCPPTTQSPPPPK 542

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rdo	NP_001286024.1	leucine-rich repeat	84..107	CDD:275380
		leucine-rich repeat	108..131	CDD:275380
		LRR_8	131..190	CDD:290566
		leucine-rich repeat	132..155	CDD:275380
		LRR_RI	151..422	CDD:238064	49/189 (26%)
		leucine-rich repeat	156..179	CDD:275380
		LRR_8	178..262	CDD:290566	5/17 (29%)
		leucine-rich repeat	180..203	CDD:275380
		leucine-rich repeat	204..251	CDD:275380	1/3 (33%)
		leucine-rich repeat	252..275	CDD:275380	6/25 (24%)
		LRR_8	274..334	CDD:290566	21/60 (35%)
		leucine-rich repeat	276..299	CDD:275380	12/23 (52%)
		LRR_4	298..342	CDD:289563	8/43 (19%)
		leucine-rich repeat	300..323	CDD:275380	8/22 (36%)
		leucine-rich repeat	388..411	CDD:275380	4/22 (18%)
LRX2	NP_176434.2	None

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	98	1.000	Inparanoid score	I2198
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.050