DRSC - DRSC Integrative Ortholog Prediction Tool

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Protein Alignment rdo and AT5G25550

DIOPT Version :9

Sequence 1:	NP_001286024.1	Gene:	rdo / 35077	FlyBaseID:	FBgn0243486	Length:	757	Species:	Drosophila melanogaster
Sequence 2:	NP_197937.1	Gene:	AT5G25550 / 832630	AraportID:	AT5G25550	Length:	433	Species:	Arabidopsis thaliana

Alignment Length:	287	Identity:	76/287 - (26%)
Similarity:	120/287 - (41%)	Gaps:	59/287 - (20%)

- Green bases have known domain annotations that are detailed below.

  Fly   120 NITENNFRGQ--------------DNLLE----LDLSKNKVLRMASSTFRHLTDLRRLNLADNSI 166
            |:|.|.|..:              |.|::    :||::..:..........|||:...::..|..
plant    71 NLTTNWFGSRVCDYNGVVCSESLDDPLVKTVSGVDLNQGDIAGHLPEELGLLTDIALFHVNSNRF 135

  Fly   167 VELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSEL 231
            ...:...|..||.|..||||.|......|:|...:|:||.|..|..:.:...|:.      |.:.
plant   136 CGTLPVGFSQLSLLFELDLSNNRFAGKFPEVVIGLPKLKYLDLRYNEFEGELPES------LFDK 194

  Fly   232 DLGRNEFKFLDKDEFRDV-------KRLTKVLLDGNQLSVVVDQLF-RMQKSLNHLDLSYNRLAK 288
            ||   :..||:.:.||..       ..::.::|..|:....:...| :|.|:||.:.|..|.|..
plant   195 DL---DALFLNSNRFRSKIPVNMGNSPVSVLVLASNRFEGCIPPSFGKMGKTLNEIILMDNGLQS 256

  Fly   289 -VPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNV--------LMDLREMRE-- 342
             :|||..| |.|:|.||:|||.||...|:|:..:.||..||:..|:        |..|.::|:
plant   257 CIPNDMGL-LQNVTVLDISYNWLVGELPKSMGQMENLEVLNVERNMLSGLIPDELCSLEKLRDFR 320

  Fly   343 ------TFEPLI------YYFFLTCSK 357
                  |.||..      |.:.:.|.|
plant   321 YGSNYFTGEPATCRYLENYNYTMNCFK 347

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
rdo	NP_001286024.1	leucine-rich repeat	84..107	CDD:275380
		leucine-rich repeat	108..131	CDD:275380	4/24 (17%)
		LRR_8	131..190	CDD:290566	16/62 (26%)
		leucine-rich repeat	132..155	CDD:275380	4/26 (15%)
		LRR_RI	151..422	CDD:238064	68/238 (29%)
		leucine-rich repeat	156..179	CDD:275380	3/22 (14%)
		LRR_8	178..262	CDD:290566	24/90 (27%)
		leucine-rich repeat	180..203	CDD:275380	8/22 (36%)
		leucine-rich repeat	204..251	CDD:275380	12/53 (23%)
		leucine-rich repeat	252..275	CDD:275380	4/23 (17%)
		LRR_8	274..334	CDD:290566	27/68 (40%)
		leucine-rich repeat	276..299	CDD:275380	10/23 (43%)
		LRR_4	298..342	CDD:289563	18/51 (35%)
		leucine-rich repeat	300..323	CDD:275380	10/22 (45%)
		leucine-rich repeat	388..411	CDD:275380
AT5G25550	NP_197937.1	leucine-rich repeat	149..172	CDD:275380	8/22 (36%)
		LRR_8	151..206	CDD:290566	18/63 (29%)
		leucine-rich repeat	173..195	CDD:275380	6/27 (22%)
		leucine-rich repeat	196..220	CDD:275380	5/26 (19%)
		leucine-rich repeat	221..242	CDD:275380	4/20 (20%)
		leucine-rich repeat	244..267	CDD:275380	10/23 (43%)
		leucine-rich repeat	268..291	CDD:275380	10/22 (45%)
		leucine-rich repeat	292..315	CDD:275380	6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	1	1.050	98	1.000	Inparanoid score	I2198
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.050