DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and lrrn3

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001072526.1 Gene:lrrn3 / 779981 XenbaseID:XB-GENE-490955 Length:706 Species:Xenopus tropicalis


Alignment Length:607 Identity:129/607 - (21%)
Similarity:228/607 - (37%) Gaps:141/607 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLFSLCIMPAMFSNT---KRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRG 67
            ||..|.|  |...:|   |..||..|.|.               :....:|..:.::...:....
 Frog    10 LLLGLAI--ATHGHTTPKKMDCPHSCSCE---------------IRPWFTPKSIYIEALTVDCNA 57

  Fly    68 PRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNL 132
                            |::..:.| .|||          ..:||.|..|||..| :|......||
 Frog    58 ----------------LDLYSVPD-KLPA----------KTQILLLQANNIEEI-KNTDHFPVNL 94

  Fly   133 LELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDV 197
            ..||||:|.:..:|:..|.::..:..:.|.:|.:.||::.:|..|..|:.|.::.|.:..:.|..
 Frog    95 TGLDLSQNNLSLIANINFTNMHQILSVYLEENKLTELMEGSFSGLENLQELYINHNLISVISPKA 159

  Fly   198 FRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQL 262
            |..|..|..|...:.:|:.||...:..:|.|..|.:|.|....::...|:.:..|..::|.|..|
 Frog   160 FAGVSNLLRLHLNSNRLQMINSMWFEAIPNLEILMIGENPIVNIEDMNFKPLINLRSLVLAGVNL 224

  Fly   263 SVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTL 327
            :.:.|..|.....|..:....|:...||:.:..::.||.||||:.|.:.|::.....::.:|..|
 Frog   225 TEIPDNAFLGLDKLESISFYDNKFIHVPSVALQKVVNLKFLDLNKNPVRRIQRGDFSNMLHLKEL 289

  Fly   328 NISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLN 392
            .|:.                               :|:|..:....:..:|        :||.: 
 Frog   290 GINN-------------------------------MPELVSIDSLAIENLP--------ELRKI- 314

  Fly   393 ISGNSLNNTALEVIDP-----CRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECH 452
               .:.||..|..|.|     ..:||.|.|:.|.|..|...|:..:..::.:.:.:||:.|| |.
 Frog   315 ---EATNNPKLAYIHPNAFYRLPKLETLMLNSNSLSAIYRSTIEALPNLKEISIHSNPMRCD-CV 375

  Fly   453 MGKLINVVR-QLQWKWDTYPICFLPKSLRGAEINNLDING-LHTCL------TFITDEEQNAAST 509
            : :.||:.: .:::.......||.|...:|..|..:.... :..||      :|..|.:.|..|:
 Frog   376 I-RWINMNKTSIRFMEPDSLFCFDPPEFQGLNIRQVHFREMMEICLPLIAPQSFPLDLDLNTGSS 439

  Fly   510 -------------SYNFLEHGGLNTLA-ILGGIIFV----LIAVIILSLVACFSKNRARYYTRED 556
                         ...::...|...:. |..||.:|    .:.:..:||.      .|..||   
 Frog   440 VSLHCRATAEPEPEIYWITPSGYKLVPNIASGIFYVHPEGTLTIKNVSLA------EAGLYT--- 495

  Fly   557 HLNGSESKCLEKNLEATTITTL 578
                    |:.|||....:.|:
 Frog   496 --------CVAKNLVGADLKTI 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 85/381 (22%)
leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
leucine-rich repeat 204..251 CDD:275380 11/46 (24%)
leucine-rich repeat 252..275 CDD:275380 6/22 (27%)
leucine-rich repeat 276..299 CDD:275380 4/22 (18%)
leucine-rich repeat 300..323 CDD:275380 7/22 (32%)
leucine-rich repeat 388..411 CDD:275380 7/27 (26%)
lrrn3NP_001072526.1 LRRNT 28..72 CDD:214470 10/85 (12%)
leucine-rich repeat 52..70 CDD:275380 5/44 (11%)
leucine-rich repeat 71..93 CDD:275380 8/22 (36%)
LRR 73..>369 CDD:443914 79/339 (23%)
leucine-rich repeat 94..117 CDD:275380 8/22 (36%)
leucine-rich repeat 118..141 CDD:275380 6/22 (27%)
leucine-rich repeat 142..165 CDD:275380 6/22 (27%)
leucine-rich repeat 166..189 CDD:275380 5/22 (23%)
leucine-rich repeat 190..213 CDD:275380 5/22 (23%)
leucine-rich repeat 214..237 CDD:275380 6/22 (27%)
leucine-rich repeat 238..261 CDD:275380 4/22 (18%)
leucine-rich repeat 262..285 CDD:275380 7/22 (32%)
leucine-rich repeat 286..310 CDD:275380 6/62 (10%)
leucine-rich repeat 311..333 CDD:275380 7/25 (28%)
leucine-rich repeat 336..359 CDD:275378 8/22 (36%)
PCC 341..>407 CDD:188093 16/67 (24%)
leucine-rich repeat 360..372 CDD:275378 2/11 (18%)
Ig_3 426..500 CDD:464046 15/90 (17%)

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