DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and ISLR2

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_065902.1 Gene:ISLR2 / 57611 HGNCID:29286 Length:745 Species:Homo sapiens


Alignment Length:578 Identity:111/578 - (19%)
Similarity:188/578 - (32%) Gaps:168/578 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   211 NCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKS 275
            :|..|::......|...::.|.|..|:...|.:..|.||.::|.:.|..|::..|......:...
Human    36 DCAYKELREVPEGLPANVTTLSLSANKITVLRRGAFADVTQVTSLWLAHNEVRTVEPGALAVLSQ 100

  Fly   276 LNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREM 340
            |.:||||:|.::..|......|:.|..|.:::|:|..|...::.:|.:|.:|.|:.|.|..|.. 
Human   101 LKNLDLSHNFISSFPWSDLRNLSALQLLKMNHNRLGSLPRDALGALPDLRSLRINNNRLRTLAP- 164

  Fly   341 RETFEPL-------IYY--FFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGN 396
             .||:.|       :|:  |...|..::.|.....|.:::.:..::...                
Human   165 -GTFDALSALSHLQLYHNPFHCGCGLVWLQAWAASTRVSLPEPDSIACA---------------- 212

  Fly   397 SLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQG---------IRNVRLDNNPLICDECH 452
              :..||:.: |...|..|..:...:| :|.:..|...|         :.:...|.:|       
Human   213 --SPPALQGV-PVYRLPALPCAPPSVH-LSAEPPLEAPGTPLRAGLAFVLHCIADGHP------- 266

  Fly   453 MGKLINVVRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCL--TFITDEEQNAASTSYNFLE 515
                   ..:|||:                    |.|.|....|  ..::.|:....:.......
Human   267 -------TPRLQWQ--------------------LQIPGGTVVLEPPVLSGEDDGVGAEEGEGEG 304

  Fly   516 HGGLNT----------------------LAILGGIIFVLIAVIILSLVACFSKNRARYYTREDHL 558
            .|.|.|                      ||:..|.:          ||...|...|..||...|.
Human   305 DGDLLTQTQAQTPTPAPAWPAPPATPRFLALANGSL----------LVPLLSAKEAGVYTCRAHN 359

  Fly   559 N-GSESKCLEKNLEATTITTLG------------NGSSPTTTTTLTL-----ATSPAAPNGPKTN 605
            . |:.|..:...:.||     |            :|.:||:....|.     :..|:.|.| |..
Human   360 ELGANSTSIRVAVAAT-----GPPKHAPGAGGEPDGQAPTSERKSTAKGRGNSVLPSKPEG-KIK 418

  Fly   606 GQGLSLSPANGSTPVHGISD-DKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGSLMYS 669
            ||||:.....|.|......| .:|:|      .:|::..         .|.::....|.....|.
Human   419 GQGLAKVSILGETETEPEEDTSEGEE------AEDQILA---------DPAEEQRCGNGDPSRYV 468

  Fly   670 VSHSPNSATTL--------------AAVAAAATVIP------PGAPSHSSMPTPTPTP 707
            .:|:.|.:..|              |...|...:.|      ||.......|.|...|
Human   469 SNHAFNQSAELKPHVFELGVIALDVAEREARVQLTPLAARWGPGPGGAGGAPRPGRRP 526

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 52/252 (21%)
leucine-rich repeat 84..107 CDD:275380
leucine-rich repeat 108..131 CDD:275380
leucine-rich repeat 132..155 CDD:275380
leucine-rich repeat 156..179 CDD:275380
leucine-rich repeat 180..203 CDD:275380
leucine-rich repeat 204..251 CDD:275380 10/39 (26%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
leucine-rich repeat 276..299 CDD:275380 8/22 (36%)
leucine-rich repeat 300..323 CDD:275380 6/22 (27%)
leucine-rich repeat 388..411 CDD:275380 3/22 (14%)
ISLR2NP_065902.1 leucine-rich repeat 36..52 CDD:275380 3/15 (20%)
LRR <51..>183 CDD:443914 35/133 (26%)
LRR 1 52..73 5/20 (25%)
leucine-rich repeat 53..76 CDD:275380 7/22 (32%)
LRR 2 76..97 4/20 (20%)
leucine-rich repeat 77..100 CDD:275380 4/22 (18%)
LRR 3 100..123 7/22 (32%)
leucine-rich repeat 101..124 CDD:275380 8/22 (36%)
LRR 4 124..145 5/20 (25%)
leucine-rich repeat 125..148 CDD:275380 6/22 (27%)
LRR 5 148..169 8/22 (36%)
leucine-rich repeat 149..172 CDD:275380 9/24 (38%)
PCC 154..>228 CDD:188093 16/94 (17%)
Ig_3 232..359 CDD:464046 26/171 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 287..326 4/38 (11%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 375..466 22/111 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 656..722
Blue background indicates that the domain is not in the aligned region.

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