DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and si:ch211-237i5.4

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_021327091.2 Gene:si:ch211-237i5.4 / 557635 ZFINID:ZDB-GENE-131121-468 Length:346 Species:Danio rerio


Alignment Length:358 Identity:105/358 - (29%)
Similarity:170/358 - (47%) Gaps:40/358 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLFKWLLFSLCIMPAMFSNTKRKCPTECQC--SMDDLDRYQAICTKGGLNSLLSPNELDVDVKVI 63
            ||....:|||.:.|   |.:.|.|...|||  ..|.:|     |...|...:  |:.|.....::
Zfish     1 MLLSIAVFSLFLCP---SRSSRLCSHLCQCYEHSDLVD-----CHARGFEDV--PHGLPHGTWLL 55

  Fly    64 IIRGPRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRG 128
            .:.|.|.:.....|......|.||.::|||:.|:.:::|:.|.:|..||:|.||:|.|..|....
Zfish    56 DLGGNRLTEIRSRAFAGLWSLRILVLSDSNIQALQSQAFFSLSFLEKLDMSHNNLTQIPPNFSES 120

  Fly   129 QDNLLELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDL 193
            ..:|.||.|..|.:..:......||.:|.:|:|:.|.|..|....|..||||::|.|.||.|   
Zfish   121 LSSLRELRLDHNALQLLKPPGLEHLENLAKLDLSHNHIQSLEPGAFRGLSRLRHLYLQGNHL--- 182

  Fly   194 QPDVFRD-----VPELKVLKCRNCQLKKINPQMYNLLPL--LSELDLGRNEFKFLDKDEFRDVK- 250
              ||.||     :|.|:||:..|..:.:|  ::..|.||  ||.|.|..|:.:.|:...|..:: 
Zfish   183 --DVIRDRSLTMLPALEVLQLGNNNISQI--EVNALAPLHSLSLLGLEGNQLEHLNFKTFLSLRT 243

  Fly   251 RLTKVLLDGNQLSVVVD--QLFRMQKSLNHL--DLSYNRLAKVPNDSFLQL--TNLTFLDLSYNK 309
            ..|.:||.||..|...|  ::|....|:.||  |..:|...:.|    .||  .:|.::|   ::
Zfish   244 ATTHLLLSGNPWSCDCDLHRVFSKLLSVRHLHVDDYHNVTCREP----WQLAGASLAWVD---SQ 301

  Fly   310 LVRLEPQSIRSLSNLLTLNISGNVLMDLREMRE 342
            |...|..::..::..:.:.:.|.::|..|:.::
Zfish   302 LCVAETVTVLVITATVIVTVFGALIMAERKRKK 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 86/288 (30%)
leucine-rich repeat 84..107 CDD:275380 9/22 (41%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
leucine-rich repeat 132..155 CDD:275380 7/22 (32%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..203 CDD:275380 10/27 (37%)
leucine-rich repeat 204..251 CDD:275380 15/49 (31%)
leucine-rich repeat 252..275 CDD:275380 8/24 (33%)
leucine-rich repeat 276..299 CDD:275380 7/26 (27%)
leucine-rich repeat 300..323 CDD:275380 4/22 (18%)
leucine-rich repeat 388..411 CDD:275380
si:ch211-237i5.4XP_021327091.2 None
Blue background indicates that the domain is not in the aligned region.

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