DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and islr2

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001013541.1 Gene:islr2 / 541396 ZFINID:ZDB-GENE-050320-95 Length:712 Species:Danio rerio


Alignment Length:308 Identity:63/308 - (20%)
Similarity:108/308 - (35%) Gaps:119/308 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLFKWLLFSLCIMPAMFSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIII 65
            |..|:|:. :.:..|:..|. ..||.:|.||    |:|               |...||.     
Zfish     1 MATKYLML-IALGTALIGNA-HCCPKQCACS----DKY---------------NHQFVDC----- 39

  Fly    66 RGPRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQD 130
                       |.:..:::.:      .||:                                  
Zfish    40 -----------AYKDLVEVPV------GLPS---------------------------------- 53

  Fly   131 NLLELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGN-----PL 190
            |...|.||.||:..:.|.||.::|.:..|.||.|.|:.:.:.....|.:||.||:|.|     |.
Zfish    54 NASTLSLSANKIKVLKSKTFVNVTQVTSLWLAHNEIITVERDTLAPLIQLKNLDISNNKIVHFPW 118

  Fly   191 QDLQPDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKV 255
            :||     .::..|::||..|                        ||...:.|:.|.::|.|..:
Zfish   119 EDL-----ANLGALQLLKMNN------------------------NEMVSIPKNAFSNLKDLRSI 154

  Fly   256 LLDGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFL 303
            .::.|:.:.:|...|....:::||.:.:|        .|:...||.:|
Zfish   155 RINNNKFTTIVQGTFDSLAAMSHLQIFHN--------PFICSCNLEWL 194

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 48/240 (20%)
leucine-rich repeat 84..107 CDD:275380 2/22 (9%)
leucine-rich repeat 108..131 CDD:275380 0/22 (0%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..203 CDD:275380 9/27 (33%)
leucine-rich repeat 204..251 CDD:275380 8/46 (17%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
leucine-rich repeat 276..299 CDD:275380 4/22 (18%)
leucine-rich repeat 300..323 CDD:275380 2/4 (50%)
leucine-rich repeat 388..411 CDD:275380
islr2NP_001013541.1 LRR <35..>182 CDD:443914 45/231 (19%)
leucine-rich repeat 35..53 CDD:275380 4/39 (10%)
leucine-rich repeat 57..78 CDD:275380 8/20 (40%)
leucine-rich repeat 79..102 CDD:275380 6/22 (27%)
leucine-rich repeat 103..126 CDD:275380 9/27 (33%)
leucine-rich repeat 127..150 CDD:275380 8/46 (17%)
leucine-rich repeat 151..174 CDD:275380 4/22 (18%)
LRRCT 183..>221 CDD:214507 5/20 (25%)
Ig 240..345 CDD:472250
Ig strand B 256..260 CDD:409405
Ig strand C 269..273 CDD:409405
Ig strand E 312..315 CDD:409405
Ig strand F 325..330 CDD:409405
Ig strand G 338..341 CDD:409405
Blue background indicates that the domain is not in the aligned region.

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