DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and CG7896

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster


Alignment Length:885 Identity:200/885 - (22%)
Similarity:317/885 - (35%) Gaps:239/885 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SMDDLDRYQAICTKGGLNSLLSPN------------ELDV-----------------DVKVIIIR 66
            :::.||..|.:..|.. |.||.|.            :||.                 |:..:.: 
  Fly   371 ALEGLDSLQTLIIKDN-NILLVPGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGDITTLSL- 433

  Fly    67 GPRNSITIGP--ALRQFMKLEILRITDSNLPAIGAESF------------------------WGL 105
             .||.|...|  :.:.|..|..|.::.::|..|.|::|                        |.|
  Fly   434 -SRNVIRELPPGSFQMFSSLHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGAPWVL 497

  Fly   106 KYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTFR------------------- 151
            ..||.||||.|.:|.:....|...:|:..|:||.|.:..:..:.|:                   
  Fly   498 PELRSLDLSGNTLTELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQVIDLSGCNIRQIS 562

  Fly   152 -----HLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRN 211
                 .|.||:.:.|.||.:.||...:|..|..:..:|||.|.:..::...|.:|.:|:.|....
  Fly   563 GDLLAGLQDLKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHG 627

  Fly   212 CQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKSL 276
            .||.....:.:|....:.|||:..|:..:|....||...||.::....|:.|....:|....:.|
  Fly   628 NQLSAFKGEYFNTGTGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELISTLQYL 692

  Fly   277 NHLDLSYNRLAKVPNDSFLQL------------------------TNLTFLDLSYNKLVRLEPQS 317
            .|:|||:|:|..:....|.:|                        |.|..|||::|.|.|:..::
  Fly   693 EHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQILDLAHNNLDRIGERT 757

  Fly   318 IRSLSNLLTLNISGNVLMDLRE------------------MRETFEPL----IYYFFLTCSKLFF 360
            ...|..|..||:.||.|.:|.:                  .|..:.||    ..:||::...|..
  Fly   758 FEGLVRLEQLNLEGNRLSELSDGVFERTKLQMLENINLAHNRFEYAPLNALQRQFFFVSSVDLSH 822

  Fly   361 QLIPQL-----------------------------------THLAIADMGTMPVGLLH-PFKQLR 389
            ..|.:|                                   ..|::|..|...:.||. ||  |:
  Fly   823 NKIKELPGDDSIMVNIKRIDLSFNPLSSKAVHNVLNEPKTVRELSLAGTGIENLELLETPF--LQ 885

  Fly   390 YLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVL---RIQGIRNVRLDNNPL-ICDE 450
            :||:|.|.|.|...||......||.||||.|||..: ||..:   ::|.::::.:.||.. |..:
  Fly   886 FLNLSHNKLKNVKPEVFQRVTLLETLDLSSNQLESL-EDLSMAWPQLQVLQSLDVSNNSFEIVSQ 949

  Fly   451 CHMGKLINVVRQLQWKWDTYPICF---------LPK--SLRGAE---INNLDINGLHTCL----- 496
            .:.||| .::|.|  :....|.|.         ||.  ||...:   :..||:.|:...|     
  Fly   950 SNFGKL-EMLRSL--RLSHLPQCTRIEKNAFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGLEV 1011

  Fly   497 TFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTREDHLNG- 560
            ..|..::.:..|.....|:|..|.:|.|.|.    .:..|....:|....|......|...||. 
  Fly  1012 LDIEVKDSSIGSEQIQPLKHPRLKSLGIRGD----RLKSISSGTLAGLKSNDLSVQLRNTSLNAL 1072

  Fly   561 --------SESKCLEKNLEATTITTLGNGSSPTTTTTLT----------LATSPAAPNGPKTNGQ 607
                    ..|..|..|:|.:.||.|    .|.....|.          ||::|...:   .|.:
  Fly  1073 PPALLFPVPRSSHLSLNVEGSKITVL----VPQFLNALEDRRASLQLQGLASNPIVCD---CNAR 1130

  Fly   608 GL-SLSPANG------STPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGS 665
            .| ...|::|      ::|.: :.:.|..|:.    .|:..|....:..|...|....||    .
  Fly  1131 ALRRWLPSSGMPDVTCASPAY-LLNRKLIEVG----DDELTCDARRMTSSTSRPTASVPH----L 1186

  Fly   666 LMYSVSHSPNSATTLAAVAAAATVIPPGAPSHSSMPTPTP 705
            |..|......|::|........::.|...||...|.|..|
  Fly  1187 LKTSSQLVTRSSSTTEEPLIIWSLEPTQPPSLKKMKTKAP 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 124/511 (24%)
leucine-rich repeat 84..107 CDD:275380 8/46 (17%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
leucine-rich repeat 132..155 CDD:275380 6/46 (13%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
leucine-rich repeat 204..251 CDD:275380 12/46 (26%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
leucine-rich repeat 276..299 CDD:275380 9/46 (20%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 388..411 CDD:275380 9/22 (41%)
CG7896NP_651754.1 PRK15370 20..>410 CDD:185268 10/39 (26%)
leucine-rich repeat 109..132 CDD:275380
leucine-rich repeat 133..161 CDD:275380
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
leucine-rich repeat 234..257 CDD:275380
PLN00113 237..>750 CDD:215061 87/381 (23%)
leucine-rich repeat 258..281 CDD:275380
leucine-rich repeat 282..329 CDD:275380
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380 1/5 (20%)
leucine-rich repeat 378..401 CDD:275380 6/23 (26%)
leucine-rich repeat 402..425 CDD:275380 2/22 (9%)
leucine-rich repeat 428..451 CDD:275380 5/24 (21%)
leucine-rich repeat 452..473 CDD:275380 6/20 (30%)
leucine-rich repeat 477..497 CDD:275378 1/19 (5%)
leucine-rich repeat 500..523 CDD:275380 9/22 (41%)
leucine-rich repeat 524..547 CDD:275380 5/22 (23%)
leucine-rich repeat 548..571 CDD:275380 1/22 (5%)
leucine-rich repeat 572..595 CDD:275380 8/22 (36%)
leucine-rich repeat 596..619 CDD:275380 6/22 (27%)
leucine-rich repeat 620..643 CDD:275380 5/22 (23%)
leucine-rich repeat 644..667 CDD:275380 7/22 (32%)
leucine-rich repeat 668..691 CDD:275380 4/22 (18%)
LRR <684..1020 CDD:443914 81/341 (24%)
leucine-rich repeat 692..715 CDD:275380 9/22 (41%)
leucine-rich repeat 716..739 CDD:275380 0/22 (0%)
leucine-rich repeat 740..761 CDD:275380 7/20 (35%)
leucine-rich repeat 764..789 CDD:275380 7/24 (29%)
leucine-rich repeat 790..810 CDD:275380 3/19 (16%)
leucine-rich repeat 818..850 CDD:275380 3/31 (10%)
leucine-rich repeat 863..883 CDD:275378 5/19 (26%)
leucine-rich repeat 884..907 CDD:275380 9/22 (41%)
leucine-rich repeat 908..933 CDD:275380 11/25 (44%)
leucine-rich repeat 934..955 CDD:275380 4/20 (20%)
leucine-rich repeat 958..982 CDD:275380 5/25 (20%)
leucine-rich repeat 983..1055 CDD:275380 16/75 (21%)
leucine-rich repeat 1009..1033 CDD:275380 4/23 (17%)
leucine-rich repeat 1058..1085 CDD:275380 5/26 (19%)
LRRCT 1121..1168 CDD:214507 9/54 (17%)
Blue background indicates that the domain is not in the aligned region.

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