DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and CG7896

DIOPT Version :9

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_651754.1 Gene:CG7896 / 43552 FlyBaseID:FBgn0039728 Length:1392 Species:Drosophila melanogaster


Alignment Length:885 Identity:200/885 - (22%)
Similarity:317/885 - (35%) Gaps:239/885 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 SMDDLDRYQAICTKGGLNSLLSPN------------ELDV-----------------DVKVIIIR 66
            :::.||..|.:..|.. |.||.|.            :||.                 |:..:.: 
  Fly   371 ALEGLDSLQTLIIKDN-NILLVPGSALGRLPQLTSLQLDYNRVAALSAEILGSLQAGDITTLSL- 433

  Fly    67 GPRNSITIGP--ALRQFMKLEILRITDSNLPAIGAESF------------------------WGL 105
             .||.|...|  :.:.|..|..|.::.::|..|.|::|                        |.|
  Fly   434 -SRNVIRELPPGSFQMFSSLHTLDLSGNSLAVINADTFAGLESTLMALKLSQNRLTGLGGAPWVL 497

  Fly   106 KYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTFR------------------- 151
            ..||.||||.|.:|.:....|...:|:..|:||.|.:..:..:.|:                   
  Fly   498 PELRSLDLSGNTLTELPSTIFEELENVQSLNLSGNHLTPLTGALFKPLDRLQVIDLSGCNIRQIS 562

  Fly   152 -----HLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRN 211
                 .|.||:.:.|.||.:.||...:|..|..:..:|||.|.:..::...|.:|.:|:.|....
  Fly   563 GDLLAGLQDLKHIYLNDNQLQELQDGSFVNLWNISSIDLSNNRIGSIRSGAFVNVMKLQKLDLHG 627

  Fly   212 CQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKSL 276
            .||.....:.:|....:.|||:..|:..:|....||...||.::....|:.|....:|....:.|
  Fly   628 NQLSAFKGEYFNTGTGIEELDISDNQLSYLFPSSFRIHPRLREIRAANNKFSFFPAELISTLQYL 692

  Fly   277 NHLDLSYNRLAKVPNDSFLQL------------------------TNLTFLDLSYNKLVRLEPQS 317
            .|:|||:|:|..:....|.:|                        |.|..|||::|.|.|:..::
  Fly   693 EHIDLSHNQLKTIEELDFARLPRLRVLLVANNQLDMVSEMAFHNSTQLQILDLAHNNLDRIGERT 757

  Fly   318 IRSLSNLLTLNISGNVLMDLRE------------------MRETFEPL----IYYFFLTCSKLFF 360
            ...|..|..||:.||.|.:|.:                  .|..:.||    ..:||::...|..
  Fly   758 FEGLVRLEQLNLEGNRLSELSDGVFERTKLQMLENINLAHNRFEYAPLNALQRQFFFVSSVDLSH 822

  Fly   361 QLIPQL-----------------------------------THLAIADMGTMPVGLLH-PFKQLR 389
            ..|.:|                                   ..|::|..|...:.||. ||  |:
  Fly   823 NKIKELPGDDSIMVNIKRIDLSFNPLSSKAVHNVLNEPKTVRELSLAGTGIENLELLETPF--LQ 885

  Fly   390 YLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVL---RIQGIRNVRLDNNPL-ICDE 450
            :||:|.|.|.|...||......||.||||.|||..: ||..:   ::|.::::.:.||.. |..:
  Fly   886 FLNLSHNKLKNVKPEVFQRVTLLETLDLSSNQLESL-EDLSMAWPQLQVLQSLDVSNNSFEIVSQ 949

  Fly   451 CHMGKLINVVRQLQWKWDTYPICF---------LPK--SLRGAE---INNLDINGLHTCL----- 496
            .:.||| .::|.|  :....|.|.         ||.  ||...:   :..||:.|:...|     
  Fly   950 SNFGKL-EMLRSL--RLSHLPQCTRIEKNAFKQLPNLVSLEAYDLPLLGYLDLQGILELLPGLEV 1011

  Fly   497 TFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTREDHLNG- 560
            ..|..::.:..|.....|:|..|.:|.|.|.    .:..|....:|....|......|...||. 
  Fly  1012 LDIEVKDSSIGSEQIQPLKHPRLKSLGIRGD----RLKSISSGTLAGLKSNDLSVQLRNTSLNAL 1072

  Fly   561 --------SESKCLEKNLEATTITTLGNGSSPTTTTTLT----------LATSPAAPNGPKTNGQ 607
                    ..|..|..|:|.:.||.|    .|.....|.          ||::|...:   .|.:
  Fly  1073 PPALLFPVPRSSHLSLNVEGSKITVL----VPQFLNALEDRRASLQLQGLASNPIVCD---CNAR 1130

  Fly   608 GL-SLSPANG------STPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGS 665
            .| ...|::|      ::|.: :.:.|..|:.    .|:..|....:..|...|....||    .
  Fly  1131 ALRRWLPSSGMPDVTCASPAY-LLNRKLIEVG----DDELTCDARRMTSSTSRPTASVPH----L 1186

  Fly   666 LMYSVSHSPNSATTLAAVAAAATVIPPGAPSHSSMPTPTP 705
            |..|......|::|........::.|...||...|.|..|
  Fly  1187 LKTSSQLVTRSSSTTEEPLIIWSLEPTQPPSLKKMKTKAP 1226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 leucine-rich repeat 84..107 CDD:275380 8/46 (17%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
LRR_8 131..190 CDD:290566 20/82 (24%)
leucine-rich repeat 132..155 CDD:275380 6/46 (13%)
LRR_RI 151..422 CDD:238064 89/376 (24%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
LRR_8 178..262 CDD:290566 21/83 (25%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
leucine-rich repeat 204..251 CDD:275380 12/46 (26%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
LRR_8 274..334 CDD:290566 23/83 (28%)
leucine-rich repeat 276..299 CDD:275380 9/46 (20%)
LRR_4 298..342 CDD:289563 16/61 (26%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 388..411 CDD:275380 9/22 (41%)
CG7896NP_651754.1 LRR_8 109..172 CDD:290566
leucine-rich repeat 109..132 CDD:275380
LRR_RI <132..338 CDD:238064
leucine-rich repeat 133..161 CDD:275380
LRR_8 160..220 CDD:290566
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..209 CDD:275380
leucine-rich repeat 210..233 CDD:275380
LRR_8 232..290 CDD:290566
leucine-rich repeat 234..257 CDD:275380
leucine-rich repeat 258..281 CDD:275380
LRR_RI 273..535 CDD:238064 38/166 (23%)
LRR_8 281..338 CDD:290566
leucine-rich repeat 282..329 CDD:275380
LRR_8 328..388 CDD:290566 4/17 (24%)
leucine-rich repeat 330..353 CDD:275380
leucine-rich repeat 354..377 CDD:275380 1/5 (20%)
leucine-rich repeat 378..401 CDD:275380 6/23 (26%)
leucine-rich repeat 402..425 CDD:275380 2/22 (9%)
leucine-rich repeat 428..451 CDD:275380 5/24 (21%)
LRR_8 429..487 CDD:290566 11/59 (19%)
leucine-rich repeat 452..473 CDD:275380 6/20 (30%)
leucine-rich repeat 477..497 CDD:275378 1/19 (5%)
LRR_8 498..558 CDD:290566 15/59 (25%)
leucine-rich repeat 500..523 CDD:275380 9/22 (41%)
LRR_RI 502..769 CDD:238064 66/266 (25%)
leucine-rich repeat 524..547 CDD:275380 5/22 (23%)
leucine-rich repeat 548..571 CDD:275380 1/22 (5%)
LRR_8 572..630 CDD:290566 16/57 (28%)
leucine-rich repeat 572..595 CDD:275380 8/22 (36%)
leucine-rich repeat 596..619 CDD:275380 6/22 (27%)
LRR_8 619..678 CDD:290566 15/58 (26%)
leucine-rich repeat 620..643 CDD:275380 5/22 (23%)
leucine-rich repeat 644..667 CDD:275380 7/22 (32%)
LRR_8 666..726 CDD:290566 14/59 (24%)
leucine-rich repeat 668..691 CDD:275380 4/22 (18%)
leucine-rich repeat 692..715 CDD:275380 9/22 (41%)
LRR_8 714..774 CDD:290566 14/59 (24%)
leucine-rich repeat 716..739 CDD:275380 0/22 (0%)
leucine-rich repeat 740..761 CDD:275380 7/20 (35%)
leucine-rich repeat 764..789 CDD:275380 7/24 (29%)
leucine-rich repeat 790..810 CDD:275380 3/19 (16%)
leucine-rich repeat 818..850 CDD:275380 3/31 (10%)
leucine-rich repeat 863..883 CDD:275378 5/19 (26%)
LRR_RI <878..1070 CDD:238064 55/201 (27%)
LRR_8 884..944 CDD:290566 23/60 (38%)
LRR_4 884..925 CDD:289563 20/41 (49%)
leucine-rich repeat 884..907 CDD:275380 9/22 (41%)
leucine-rich repeat 908..933 CDD:275380 11/25 (44%)
leucine-rich repeat 934..955 CDD:275380 4/20 (20%)
leucine-rich repeat 958..982 CDD:275380 5/25 (20%)
leucine-rich repeat 983..1055 CDD:275380 16/75 (21%)
leucine-rich repeat 1009..1033 CDD:275380 4/23 (17%)
leucine-rich repeat 1058..1085 CDD:275380 5/26 (19%)
TPKR_C2 1121..1168 CDD:301599 9/54 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45453762
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24366
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.940

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