Protein Alignment rdo and CG5810

DIOPT Version :9

• Sequence 1: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Sequence 2: NP_650952.2
• Gene: CG5810 / 42513
• FlyBaseID: FBgn0038866
• Length: 428
• Species: Drosophila melanogaster
• Alignment Length: 382
• Identity: 89/382 - (23%)
• Similarity: 177/382 - (46%)
• Gaps: 59/382 - (15%)

  Fly    83 KLEILRI--------TDSNL--PAIGAESFWG---LKYLR---ILDLSKNNITNITENNFRGQDN 131
            |||.:.|        |.:||  |:..|.:::.   .|:||   .|.|..:::.|:....|.....
  Fly    24 KLEEIAIDSLDCRENTCTNLKYPSASAVAYFSENVTKHLRKYETLVLHSSDLANLPRKIFLNLPQ 88

  Fly   132 LLELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPD 196
            |:|..:.:.::.::.|..|....:|:|||...|::..|....|.:.::|:.|:||.|.|:||...
  Fly    89 LVEFHVLECELQQIESVCFDGAKNLKRLNFGGNALRVLDSNTFELATQLEELNLSDNQLEDLPTT 153

  Fly   197 VFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDV-KRLTKVLLDGN 260
            :||.:..|:.:...|.:|..::..:::.|..|..:::..|:...|..:.|||. |.|::.....|
  Fly   154 IFRPLKNLQKINLSNNRLITLSQHIFSQLGSLKSINVDSNQLVELPGELFRDQRKHLSEFSAQSN 218

  Fly   261 QLSVVVDQLFRMQKSLNHLDLSYN----RL---AKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSI 318
            ||..:...:||   .::||.||:|    ||   ||: |:  |:.||   .||          :|:
  Fly   219 QLVRIPFNIFR---EIDHLSLSFNPQLRRLHLSAKI-NE--LEATN---CDL----------ESV 264

  Fly   319 RSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKL----FFQLIPQLTHLAIAD---MGT 376
            .....::.:.:..|  ..|.|::.:....:.:.:|..:.|    |.....:|..|.:.|   :..
  Fly   265 ELDGRVIGVQLEAN--PKLHELKISQPQDLEHLYLANTNLYRLDFLSKASKLVDLDVTDIVNLAD 327

  Fly   377 MPVGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQ-----LHGISED 428
            :|  .:...|.|..|:.:.::|.:..::::...::|.:|::|..:     :..:.||
  Fly   328 LP--KITSAKGLERLSFTYDNLTSNHMDMLPHLKDLNYLEISHEKGKEIFIKDLDED 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rdo	NP_001286024.1	leucine-rich repeat	84..107	CDD:275380	8/35 (23%)
		leucine-rich repeat	108..131	CDD:275380	6/25 (24%)
		LRR_8	131..190	CDD:290566	16/58 (28%)
		leucine-rich repeat	132..155	CDD:275380	4/22 (18%)
		LRR_RI	151..422	CDD:238064	67/290 (23%)
		leucine-rich repeat	156..179	CDD:275380	7/22 (32%)
		LRR_8	178..262	CDD:290566	23/84 (27%)
		leucine-rich repeat	180..203	CDD:275380	10/22 (45%)
		leucine-rich repeat	204..251	CDD:275380	10/47 (21%)
		leucine-rich repeat	252..275	CDD:275380	6/22 (27%)
		LRR_8	274..334	CDD:290566	17/66 (26%)
		leucine-rich repeat	276..299	CDD:275380	11/29 (38%)
		LRR_4	298..342	CDD:289563	8/43 (19%)
		leucine-rich repeat	300..323	CDD:275380	3/22 (14%)
		leucine-rich repeat	388..411	CDD:275380	3/22 (14%)
CG5810	NP_650952.2	leucine-rich repeat	65..88	CDD:275380	4/22 (18%)
		LRR_8	87..147	CDD:290566	16/59 (27%)
		leucine-rich repeat	89..112	CDD:275380	4/22 (18%)
		leucine-rich repeat	113..136	CDD:275380	7/22 (32%)
		LRR_8	135..195	CDD:290566	16/59 (27%)
		LRR_4	135..175	CDD:289563	13/39 (33%)
		leucine-rich repeat	137..160	CDD:275380	10/22 (45%)
		leucine-rich repeat	161..184	CDD:275380	4/22 (18%)
		leucine-rich repeat	185..209	CDD:275380	6/23 (26%)
		leucine-rich repeat	210..231	CDD:275380	6/23 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45453642
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930