DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and tlr5a

DIOPT Version :9

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_001919052.2 Gene:tlr5a / 403138 ZFINID:ZDB-GENE-040219-14 Length:881 Species:Danio rerio


Alignment Length:676 Identity:142/676 - (21%)
Similarity:212/676 - (31%) Gaps:296/676 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLFKWLLFSLCIMPAMFSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIII 65
            :||.|                  .||....|:...|.|.|.|...||.                 
Zfish    11 LLFIW------------------TPTVKSTSVCSTDGYFAFCMDRGLQ----------------- 40

  Fly    66 RGPRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITE------- 123
                               |:.:|:               .|:..:|||||.|..:.|       
Zfish    41 -------------------EVPKIS---------------TYITNVDLSKNRIAELNETSFSHLE 71

  Fly   124 ------------------NNFRGQDNLLELDLSKNKVLRMASSTFRHLTDLRRLNLA----DNSI 166
                              |:|....||..|.|..|..||:.:..|..|:||:.|.|.    |:| 
Zfish    72 ALEVLILMHQTPGLVIRRNSFMRLSNLTSLQLDYNHHLRIDAGAFNGLSDLKNLTLTQCGLDDS- 135

  Fly   167 VELVQRNFFM-LSRLKYLDLSGNPLQDLQP-DVFRDVPELKVL-----KCRN-CQLKKINPQ--M 221
              |:..||.. |..|:.||||.|.::.:|| ..|.::....||     |.:: |:...:|.|  .
Zfish   136 --LLSGNFLKPLMSLEMLDLSRNNIRRVQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 198

  Fly   222 YNLLPL--------------------------LSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGN 260
            :.||.|                          ::.|||..|.|.......|.|....||:     
Zfish   199 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFNVDMAKRFFDAISSTKI----- 258

  Fly   261 QLSVVVDQLFRMQKS--------------------------------------------LNHLDL 281
             .|:::...:|:.||                                            |..:.|
Zfish   259 -QSLIISNTYRIGKSSGDNSKDPDKSTFSGLKSSGIKSFDLSNSSIFSLTYSVFSYLSDLEQITL 322

  Fly   282 SYNRLAKVPNDSFLQLTNL----------------TF--------LDLSYNKLVRLEPQSIRSLS 322
            :.:::.|:.|::||.:|||                ||        ||||||.:.||..||.:.|.
Zfish   323 AESQINKIENNAFLGMTNLLKLNLSKNFLGYIDFRTFQNLKGLEVLDLSYNHIWRLGSQSFQGLP 387

  Fly   323 NLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKL-----------FFQLIPQLT-HLAIADMG 375
            |||:||::||.|..:            |.|.|..||           :...||.:. ||...|:.
Zfish   388 NLLSLNLTGNSLGHV------------YTFATLPKLEKLYLGDNNIQYVYEIPNIAKHLKTLDLQ 440

  Fly   376 TMPVG-------LLHPFKQLRYLNISGNSL------------------------------NNTAL 403
            ...:.       :|..|.|:..:...||.|                              ....|
Zfish   441 FNQIASMSELYTILDEFPQIEEVVFRGNQLLYCPQDNHEVLSQNIQVLDLSFAGLQVIWSEGKCL 505

  Fly   404 EVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQLQWKWD 468
            .|.|...:||.|.||.|.|..:.:|....:..:..:.|..|.|                   |: 
Zfish   506 NVFDDLHQLEVLHLSSNLLQSLPKDIFKDLTSLLILDLSFNSL-------------------KY- 550

  Fly   469 TYPICFLPKSLRGAEINNLDINGLHT 494
             .|....||:|   ::.:||.|.:::
Zfish   551 -LPTDVFPKTL---QVLHLDYNSIYS 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 leucine-rich repeat 84..107 CDD:275380 2/22 (9%)
leucine-rich repeat 108..131 CDD:275380 9/47 (19%)
LRR_8 131..190 CDD:290566 25/63 (40%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
LRR_RI 151..422 CDD:238064 97/427 (23%)
leucine-rich repeat 156..179 CDD:275380 9/27 (33%)
LRR_8 178..262 CDD:290566 27/118 (23%)
leucine-rich repeat 180..203 CDD:275380 9/23 (39%)
leucine-rich repeat 204..251 CDD:275380 16/80 (20%)
leucine-rich repeat 252..275 CDD:275380 4/22 (18%)
LRR_8 274..334 CDD:290566 31/127 (24%)
leucine-rich repeat 276..299 CDD:275380 6/22 (27%)
LRR_4 298..342 CDD:289563 24/67 (36%)
leucine-rich repeat 300..323 CDD:275380 14/46 (30%)
leucine-rich repeat 388..411 CDD:275380 6/52 (12%)
tlr5aXP_001919052.2 LRR_8 50..107 CDD:290566 13/56 (23%)
leucine-rich repeat 50..72 CDD:275380 7/21 (33%)
leucine-rich repeat 73..97 CDD:275380 2/23 (9%)
LRR_8 96..158 CDD:290566 25/64 (39%)
leucine-rich repeat 98..121 CDD:275380 8/22 (36%)
leucine-rich repeat 122..147 CDD:275380 9/27 (33%)
leucine-rich repeat 148..172 CDD:275380 9/23 (39%)
leucine-rich repeat 173..230 CDD:275380 9/56 (16%)
LRR_RI <218..478 CDD:238064 59/277 (21%)
LRR_8 291..349 CDD:290566 9/57 (16%)
leucine-rich repeat 297..316 CDD:275380 0/18 (0%)
leucine-rich repeat 317..340 CDD:275380 6/22 (27%)
LRR_8 339..399 CDD:290566 23/59 (39%)
leucine-rich repeat 341..364 CDD:275380 3/22 (14%)
leucine-rich repeat 365..388 CDD:275380 11/22 (50%)
LRR_8 387..444 CDD:290566 18/68 (26%)
leucine-rich repeat 389..410 CDD:275380 10/32 (31%)
leucine-rich repeat 411..433 CDD:275380 3/21 (14%)
leucine-rich repeat 434..513 CDD:275380 11/78 (14%)
leucine-rich repeat 485..499 CDD:275378 0/13 (0%)
LRR_8 513..570 CDD:290566 19/80 (24%)
leucine-rich repeat 514..537 CDD:275380 8/22 (36%)
leucine-rich repeat 538..559 CDD:275380 6/41 (15%)
leucine-rich repeat 560..581 CDD:275380 4/16 (25%)
LRRCT 589..638 CDD:214507
TIR 705..839 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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