DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and tlr1

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001124065.1 Gene:tlr1 / 403127 ZFINID:ZDB-GENE-040220-1 Length:795 Species:Danio rerio


Alignment Length:686 Identity:146/686 - (21%)
Similarity:240/686 - (34%) Gaps:202/686 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WLLFSL---CIMPAMFSNTKR-----------KCPTECQCSMDDLDRYQAICTKGGLNSLLSPNE 55
            |.|.|:   |..|::....:|           ..|.:.:.|.:|||.        .||.:.|.|.
Zfish     7 WWLVSVYLTCFHPSLIPAIQRIIVNYSSQNLSSVPDDLKPSTEDLDL--------SLNHIQSLNC 63

  Fly    56 LDVDVKVIIIRGPRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITN 120
            .|.:..      ||              |..|.::.:.|..|..::|.....|.:||||.|.:.|
Zfish    64 RDFNTT------PR--------------LRFLNLSWNILENIDRDTFTSTPALEMLDLSHNGLQN 108

  Fly   121 ITENNFRGQDNLLE-LDLSKNKVLRMA-SSTFRHLTDLRRLNLADNS--------IVELVQRNFF 175
            ::|..:......|| ||||.|:...|| ...|..|..|:.|.|:..|        |..|..|..|
Zfish   109 LSEQPYLLHLGCLELLDLSSNRFSAMALGEEFSMLKRLQWLGLSAKSISIQDFTHISNLTLRTLF 173

  Fly   176 MLSRLKYLDLSGNPLQDLQP------------------DVFRDVPELKVLK-------------- 208
             ::....|...||.|.|:..                  |||....|::..|              
Zfish   174 -INADGLLTYEGNSLDDVHAEKAVIALSSTNVDIAIANDVFARFKEVEFTKVDGKMEVVQQMRSR 237

  Fly   209 --CRNCQLK-------------KINPQMYNLLPLLSELDLGRNEFKFLDKD----------EFRD 248
              .|..:|:             .:|..:.:.:..||..||...|.    ||          |...
Zfish   238 ALMRTVRLEISNVKTTWEFLTSSVNTILSSTIRELSLTDLTLTEM----KDGANQSSTHILESFS 298

  Fly   249 VKRLT--------KVLLD------GNQLSVVVDQLFRMQ-----KSLNHLDLSYNRLAKV----- 289
            .||.:        |:|.|      ..::|:....:..|.     ..:..||||...|.:.     
Zfish   299 TKRASVTTFIFDQKMLYDFFINTPARKVSLTESPIIFMTCPGTISKIQELDLSDCALTEKIFSVN 363

  Fly   290 PNDSFLQLTNLTFLDLSYNKLVRLEP--QSIRSLSNLLTLNISGNVLMDLREMRETF-EPLIYYF 351
            |......|.|||.|.|..|.|..|.|  ..|..:.:|..:::|.|.|.........| .|.:.:.
Zfish   364 PETECGTLVNLTRLVLRGNNLKHLSPLTSRINLMDSLQYIDLSQNTLTYSENQGRCFWPPRVLHV 428

  Fly   352 FLT---CSKLFFQLIP---QLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSLNNTALEVIDPCR 410
            .|:   ..::.|:.:|   |:.:|....:.|:|.. :|.|..|:.::::.|.|.:     :..||
Zfish   429 DLSRNGFDEVVFKCLPDSVQVLNLRHNRVSTVPAD-IHTFDTLQVIDLTFNRLLD-----LPTCR 487

  Fly   411 ---ELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHM---GKLINVVRQLQWK--- 466
               .|:.|.:..|.:|.....::...|.::::.|.:||.|| .|.:   ..|||......:|   
Zfish   488 SFPSLQKLLIRSNSIHSPVPGSLKTCQHLQDLDLSHNPFIC-TCALRDFASLINAQGIKTFKSTL 551

  Fly   467 --WDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGII 529
              |.....|..|:|...:.:.:..:..: :|..:|                      |||.  |:
Zfish   552 KHWPDGYRCSYPESWSNSTLEDFYLPEI-SCNAWI----------------------LAIT--IL 591

  Fly   530 FVLIAVIILSLVAC------------FSKNRARYYT 553
            ...|::|:...:.|            :...||::|:
Zfish   592 IPTISLIVAVSLLCNRLDIPWYVRMMWKWTRAKHYS 627

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 105/479 (22%)
leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 11/24 (46%)
leucine-rich repeat 156..179 CDD:275380 8/30 (27%)
leucine-rich repeat 180..203 CDD:275380 8/40 (20%)
leucine-rich repeat 204..251 CDD:275380 12/85 (14%)
leucine-rich repeat 252..275 CDD:275380 5/41 (12%)
leucine-rich repeat 276..299 CDD:275380 7/27 (26%)
leucine-rich repeat 300..323 CDD:275380 9/24 (38%)
leucine-rich repeat 388..411 CDD:275380 5/25 (20%)
tlr1NP_001124065.1 LRR <30..208 CDD:443914 49/206 (24%)
LRR_8 46..106 CDD:404697 22/87 (25%)
leucine-rich repeat 48..71 CDD:275378 8/36 (22%)
leucine-rich repeat 72..95 CDD:275378 5/22 (23%)
leucine-rich repeat 96..145 CDD:275378 19/48 (40%)
leucine-rich repeat 146..166 CDD:275378 5/19 (26%)
LRR 251..>526 CDD:443914 60/284 (21%)
leucine-rich repeat 346..373 CDD:275380 7/26 (27%)
leucine-rich repeat 374..399 CDD:275380 9/24 (38%)
leucine-rich repeat 400..425 CDD:275380 6/24 (25%)
leucine-rich repeat 426..446 CDD:275380 3/19 (16%)
leucine-rich repeat 447..469 CDD:275380 6/22 (27%)
leucine-rich repeat 470..491 CDD:275380 5/25 (20%)
leucine-rich repeat 492..515 CDD:275380 4/22 (18%)
LRRCT 524..>565 CDD:214507 12/41 (29%)
TIR 642..783 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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