DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and tlr2

DIOPT Version :9

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_005170910.1 Gene:tlr2 / 403125 ZFINID:ZDB-GENE-040219-6 Length:818 Species:Danio rerio


Alignment Length:662 Identity:149/662 - (22%)
Similarity:228/662 - (34%) Gaps:227/662 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 KCPTECQCSMDDLDRYQAICTKGGLNSLLS-PNE-LDVDVKVIIIRGPRNSITIGPALRQFMKLE 85
            :|...|:|.    ..|...|:...|:.:.: |:: |.:|:                   .|.::|
Zfish    52 ECSQTCKCD----QMYFCNCSSNNLHQVPTVPSDVLGLDL-------------------SFNQIE 93

  Fly    86 ILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTF 150
            .:.:||.:          ....|.||:|.||.:.:|..:.|:.|.||..||||.|.:..::.|.|
Zfish    94 SINMTDLS----------SYNELIILNLHKNKLRHIHRDAFKSQHNLEVLDLSLNNLNNLSPSWF 148

  Fly   151 RHLTDLRRLNLADNSIVELVQRNFF-MLSRLKYLDLSGNPLQDLQP---DVFRDVPEL-----KV 206
            ..|..|::|||..|....:.....| .|..|:.|.|....|::|..   ||...:.|:     .:
Zfish   149 HKLKSLQQLNLVGNPYSTVGPAPIFKSLVNLRTLHLGSPSLRELHKNGLDVLTHLDEMTFFGSNL 213

  Fly   207 LKCRNCQLKKINP------QMYNLLPLLSEL------DLGRNEFKFLDKD----------EFRDV 249
            ....|..||...|      .:.||.....||      |:...|...:.||          .|:.|
Zfish   214 RSYENGSLKAARPIGSVSLSLQNLFESDPELVSKVLQDVSHPETLLIIKDVTMKTNTSTEPFKMV 278

  Fly   250 KR-----------------LTKVL--LDGNQLSVV-VDQL-------FRMQKSLNH--LDLSYNR 285
            |.                 ||..|  :||:.||.: ::.:       ::..|..:|  |..:|.|
Zfish   279 KEGGTKSLTFQNSSTTDQALTSFLEFMDGSPLSFIGLEDIQFVGIGEWQKAKYTHHDSLRTAYLR 343

  Fly   286 ------------------LAK--------------VPNDSFLQLTNLTFLDLSYNKLVRLEPQ-- 316
                              |.|              :|.::...|.||.::|||.|.|..|..|  
Zfish   344 NIEIEGFFGFSSMIELGFLLKHFHNVSVINATVFVIPKETTFLLKNLEYMDLSQNLLTDLTIQPT 408

  Fly   317 ---SIRSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMG--- 375
               ...:..||..||:|.|||..|                   .|..:|:..|..|...|:.   
Zfish   409 LYTGSGAYQNLNMLNVSQNVLKSL-------------------GLMSRLVTNLKKLKYLDLSYNS 454

  Fly   376 --TMPVGLLHPFKQLRYLNISGNSLNNTALEVIDPC--RELEFLDLSRNQLHGISED----TVLR 432
              :||.....|. .||:||:|     :|.|..:.||  ..|..||||.|.|....:.    |.|.
Zfish   455 FVSMPEKCSWPV-TLRFLNLS-----STKLSTLTPCLPSSLTVLDLSENDLKAFKQRFPHLTTLI 513

  Fly   433 IQGIRNVRLDNNPLICDECHMGKLI----------NVVRQLQWKWDTYPICFLPKSLRG------ 481
            :.|.|.::|.:          |||.          |.:|.           |...|||.      
Zfish   514 LTGNRLMKLPD----------GKLFPSLNTLLIQRNALRM-----------FNQSSLRSFKTLLY 557

  Fly   482 --AEINNL------------DINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVL 532
              |..||.            |:..|.|    :.|..||....:...|....::::.:.....:::
Zfish   558 LEAGANNFVCSCKFVSFFKKDVEDLIT----LQDGRQNYVCNTPFTLRGNAIDSVRLSVFECYMI 618

  Fly   533 IAVIILSLVACF 544
            .||.:|    ||
Zfish   619 PAVSVL----CF 626

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 leucine-rich repeat 84..107 CDD:275380 3/22 (14%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
LRR_8 131..190 CDD:290566 20/59 (34%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
LRR_RI 151..422 CDD:238064 88/374 (24%)
leucine-rich repeat 156..179 CDD:275380 7/23 (30%)
LRR_8 178..262 CDD:290566 28/132 (21%)
leucine-rich repeat 180..203 CDD:275380 7/25 (28%)
leucine-rich repeat 204..251 CDD:275380 14/73 (19%)
leucine-rich repeat 252..275 CDD:275380 7/32 (22%)
LRR_8 274..334 CDD:290566 24/98 (24%)
leucine-rich repeat 276..299 CDD:275380 8/56 (14%)
LRR_4 298..342 CDD:289563 18/48 (38%)
leucine-rich repeat 300..323 CDD:275380 8/27 (30%)
leucine-rich repeat 388..411 CDD:275380 9/24 (38%)
tlr2XP_005170910.1 leucine-rich repeat 85..105 CDD:275378 5/48 (10%)
leucine-rich repeat 106..129 CDD:275378 9/22 (41%)
LRR_8 108..163 CDD:290566 22/54 (41%)
leucine-rich repeat 130..153 CDD:275378 9/22 (41%)
leucine-rich repeat 154..178 CDD:275378 7/23 (30%)
leucine-rich repeat 179..192 CDD:275378 4/12 (33%)
LRR_RI <390..501 CDD:238064 41/135 (30%)
leucine-rich repeat 390..418 CDD:275380 8/27 (30%)
LRR_8 418..478 CDD:290566 23/84 (27%)
leucine-rich repeat 419..444 CDD:275380 11/43 (26%)
leucine-rich repeat 445..467 CDD:275380 5/22 (23%)
leucine-rich repeat 468..488 CDD:275380 9/24 (38%)
leucine-rich repeat 489..508 CDD:275380 7/18 (39%)
leucine-rich repeat 509..530 CDD:275380 8/30 (27%)
leucine-rich repeat 531..554 CDD:275380 6/33 (18%)
TIR 671..814 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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