DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and Toll-6

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_524081.1 Gene:Toll-6 / 39663 FlyBaseID:FBgn0036494 Length:1514 Species:Drosophila melanogaster


Alignment Length:810 Identity:176/810 - (21%)
Similarity:283/810 - (34%) Gaps:275/810 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WLLFSLCIMPAMFSNTKR------------KCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELD 57
            |...:..|....||.|:|            ..|....|::.:|         ..||  :|.|.|.
  Fly   184 WPALNFEIEADAFSVTRRLERLDLSSNNIWSLPDNIFCTLSEL---------SALN--MSENRLQ 237

  Fly    58 VDVKVIIIRG----PRNSITIGPALRQFMK------------LEILRITDSNLPAIGAESFWGLK 106
             ||..:..|.    |.|..|...:..:..|            ||.|.::.::...:.|..|..|:
  Fly   238 -DVNELGFRDRSKEPTNGSTESTSTTESAKKSSSSSTSCSLDLEYLDVSHNDFVVLPANGFGTLR 301

  Fly   107 YLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMAS------------------------ 147
            .||:|.::.|.|:.|.:....|..||..|:||.||::.:.:                        
  Fly   302 RLRVLSVNNNGISMIADKALSGLKNLQILNLSSNKIVALPTELFAEQAKIIQEVYLQNNSISVLN 366

  Fly   148 -STFRHLTDLRRLNLADNSIVEL-VQRNFFM-LSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKC 209
             ..|.:|..|:.|:|:.|.|... :.:|.|: |.||..|:||.|.|..|:|::|.|:..|::|..
  Fly   367 PQLFSNLDQLQALDLSMNQITSTWIDKNTFVGLIRLVLLNLSHNKLTKLEPEIFSDLYTLQILNL 431

  Fly   210 RNCQLKKINPQMYNLLPLLSELDLGRNEFKFLD------------------------KDEFRDVK 250
            |:.||:.|....:..:..|..|.|..|:.|:||                        .|.||:..
  Fly   432 RHNQLENIAADTFAPMNNLHTLLLSHNKLKYLDAYALNGLYVLSLLSLDNNALIGVHPDAFRNCS 496

  Fly   251 RLTKVLLDGNQL-----------------------SVVVDQLFRMQKSLNHLDLSYNRLAKVPND 292
            .|..:.|:||||                       :|:.|..|:...:|..|.|..|.|..:...
  Fly   497 ALQDLNLNGNQLKTVPLALRNMRHLRTVDLGENMITVMEDSAFKGLGNLYGLRLIGNYLENITMH 561

  Fly   293 SFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSK 357
            :|..|.||..|:|:.|::..:||.:....|::..:.:.||.|.|:..:                 
  Fly   562 TFRDLPNLQILNLARNRIAVVEPGAFEMTSSIQAVRLDGNELNDINGL----------------- 609

  Fly   358 LFFQLIPQLTHLAIA-------DMGTMPVGL----LHPFK--------------QLRYLNISGNS 397
              |..:|.|..|.|:       |.|.:|..|    ||..:              :|:.|::|.|.
  Fly   610 --FSNMPSLLWLNISDNRLESFDYGHVPSTLQWLDLHKNRLSSLSNRFGLDSELKLQTLDVSFNQ 672

  Fly   398 -----------------LNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIR-------- 437
                             ||:..:..:||...:...:|:|..|:. ::.|.|.|:.:|        
  Fly   673 LQRIGPSSIPNSIELLFLNDNLITTVDPDTFMHKTNLTRVDLYA-NQITTLDIKSLRILPVWEHR 736

  Fly   438 ---NVRLDNNPLICDECHMGKL--INVVRQLQWKWDTYP--------ICFLPKSLRGAEINNLDI 489
               ...:..||..|| |::..|  ||.:...|     ||        .|.|..:...|.|..::.
  Fly   737 ALPEFYIGGNPFTCD-CNIDWLQKINHITSRQ-----YPRIMDLETIYCKLLNNRERAYIPLIEA 795

  Fly   490 NGLHTCLTFIT--------------DEEQNAAST---------SYNFLEHGGL------------ 519
            ...|...|:.|              |.|....:.         |.|.:|..|.            
  Fly   796 EPKHFLCTYKTHCFAVCHCCEFDACDCEMTCPTNCTCFHDQTWSTNIVECSGAAYSEMPRRVPMD 860

  Fly   520 --------NTLAILGGIIFV---LIAVIILSLVACFSKNRARYYT--------------REDH-- 557
                    |....|.|..|:   .:||:..:     :.|.|..|.              .::|  
  Fly   861 TSELYIDGNNFVELAGHSFLGRKNLAVLYAN-----NSNVAHIYNTTFSGLKRLLILHLEDNHII 920

  Fly   558 -LNGSESKCLEK----NLEATTITTLGNGS 582
             |.|:|...||.    .|::..|.::.|||
  Fly   921 SLEGNEFHNLENLRELYLQSNKIASIANGS 950

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 115/515 (22%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
leucine-rich repeat 132..155 CDD:275380 8/47 (17%)
leucine-rich repeat 156..179 CDD:275380 8/24 (33%)
leucine-rich repeat 180..203 CDD:275380 10/22 (45%)
leucine-rich repeat 204..251 CDD:275380 16/70 (23%)
leucine-rich repeat 252..275 CDD:275380 9/45 (20%)
leucine-rich repeat 276..299 CDD:275380 7/22 (32%)
leucine-rich repeat 300..323 CDD:275380 6/22 (27%)
leucine-rich repeat 388..411 CDD:275380 8/39 (21%)
Toll-6NP_524081.1 PPP1R42 <135..>242 CDD:455733 16/69 (23%)
leucine-rich repeat 148..171 CDD:275380
leucine-rich repeat 172..201 CDD:275380 5/16 (31%)
LRR_8 200..>246 CDD:404697 11/57 (19%)
leucine-rich repeat 202..278 CDD:275380 15/87 (17%)
leucine-rich repeat 229..249 CDD:275380 8/22 (36%)
leucine-rich repeat 279..302 CDD:275380 6/22 (27%)
LRR 299..654 CDD:443914 91/373 (24%)
leucine-rich repeat 303..326 CDD:275380 7/22 (32%)
leucine-rich repeat 327..350 CDD:275380 6/22 (27%)
leucine-rich repeat 352..375 CDD:275380 2/22 (9%)
leucine-rich repeat 376..401 CDD:275380 8/24 (33%)
leucine-rich repeat 402..425 CDD:275380 10/22 (45%)
leucine-rich repeat 426..449 CDD:275380 6/22 (27%)
leucine-rich repeat 450..473 CDD:275380 7/22 (32%)
leucine-rich repeat 474..497 CDD:275380 3/22 (14%)
leucine-rich repeat 498..518 CDD:275380 6/19 (32%)
leucine-rich repeat 521..544 CDD:275380 3/22 (14%)
leucine-rich repeat 545..566 CDD:275380 6/20 (30%)
leucine-rich repeat 569..592 CDD:275380 6/22 (27%)
leucine-rich repeat 593..615 CDD:275380 5/40 (13%)
leucine-rich repeat 616..637 CDD:275380 6/20 (30%)
leucine-rich repeat 638..662 CDD:275380 3/23 (13%)
LRR_8 662..719 CDD:404697 11/57 (19%)
leucine-rich repeat 663..684 CDD:275380 4/20 (20%)
leucine-rich repeat 685..708 CDD:275380 4/22 (18%)
leucine-rich repeat 709..728 CDD:275380 6/19 (32%)
LRR <863..>990 CDD:443914 20/93 (22%)
leucine-rich repeat 885..908 CDD:275380 5/27 (19%)
leucine-rich repeat 909..932 CDD:275380 5/22 (23%)
leucine-rich repeat 933..956 CDD:275380 5/18 (28%)
TIR 1114..1247 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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