DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and trn

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001261796.1 Gene:trn / 39491 FlyBaseID:FBgn0010452 Length:751 Species:Drosophila melanogaster


Alignment Length:842 Identity:192/842 - (22%)
Similarity:310/842 - (36%) Gaps:210/842 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 W-LLFSLCIMPAM-FSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRG 67
            | :|.|:.:.||. .:|    ||..|||  || :.....|.:|.|:.|  |..|:..::.::|:.
  Fly    13 WCILASIGVEPAAGLAN----CPPGCQC--DD-NTLVVQCGEGQLDVL--PIALNPSIQRLVIKS 68

  Fly    68 PRNSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNL 132
            .:                 ::..||::      .|:.  .|..||||.|::..|.:..|..|..|
  Fly    69 NK-----------------IKTIDSSI------QFYA--ELTFLDLSSNHLMTIPQRTFAYQKKL 108

  Fly   133 LELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDV 197
            .|:.|:.||:.::::.||..|:.:..|||..|.|.||.|..|..|.:::.|:|..|.:..|.|..
  Fly   109 QEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELHQGTFTPLLKIEELNLGENRIGYLDPKA 173

  Fly   198 FRDVPELKVLKCRNCQLKKI-NPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQ 261
            |..:.:|::|...:..|..: :|.::..:|.|:||.||.|..:.:..|.|:|:|.||::.|.|..
  Fly   174 FDGLSQLRILYLDDNALTTVPDPVIFQAMPSLAELFLGMNTLQSIQADAFQDLKGLTRLELKGAS 238

  Fly   262 LSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLT 326
            |..:....|...:.|..||||.|||.::|:....:|..|..|.|..|....:...:...|..|..
  Fly   239 LRNISHDSFLGLQELRILDLSDNRLDRIPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKR 303

  Fly   327 LNISGNVLMDLREMRETFEP--LIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLR 389
            |.::|.:.:. |.|...|..  .:.|..|:.:|:..:               :..|.|....||:
  Fly   304 LEVNGALRLK-RVMTGAFSDNGNLEYLNLSSNKMLLE---------------VQEGALSGLSQLK 352

  Fly   390 YLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMG 454
            ::.:..|:|.:.| |.:.|.::|:.||||                        .|||.|| |.:.
  Fly   353 HVVLKANALTSLA-EGLFPWKDLQTLDLS------------------------ENPLSCD-CRVM 391

  Fly   455 KLINVVRQLQWKWDTYP--ICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHG 517
            .|.|::.......|...  :|..|:.|||..:.:|                 |.|...   ..|.
  Fly   392 WLHNLLVAKNASQDDVSELLCEFPERLRGESLRHL-----------------NPAMMG---CTHA 436

  Fly   518 GLNTLAILGGIIF---VLIAVIILSLVACFSK----------------NRARYYTR----EDHLN 559
            .....|::|.::.   ..|..:.|.|..|..|                .:.|.|.:    ||:::
  Fly   437 DPRKQALIGALLVGSAATITALALVLYRCRHKIRETIKGGLWGNSALGRKEREYQKTFCDEDYMS 501

  Fly   560 GSESKCLEKNLEATTITTLGNGSSPTTTTTLTLATSPAAPNG---PKTNGQGLSLSPA------- 614
            ..:.......:.:|...|......|..|....:...|....|   |:...|.|.:..|       
  Fly   502 RHQHHPCSLGIHSTFPNTYTAPHHPGATHHYGMCPMPVNDLGAIDPQQKFQQLVVPTATMISEKK 566

  Fly   615 ---NGSTPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPPPPQQHPHPNMGSLMYSVSHSPNS 676
               |.:....|..||..     :|.:..:..|:...:....|....:..|...|...:|..|..|
  Fly   567 LNNNKALVSQGAIDDSA-----SFVLHMKSATMGRDVHQQNPQLNHYTKPQFLSATATVGDSCYS 626

  Fly   677 ATTLAAVAAAATVIPPGAP-----------------------------------SHSSMP----- 701
            ...:..|..|    |.|.|                                   :|.|||     
  Fly   627 YADVPMVHGA----PLGGPNQPQLRLTQEHFKQRELYDQEMGSEILDHNYIYSNTHYSMPLEQLG 687

  Fly   702 ---TPTPTPAEAVVVVLPPPPLPPQQ------HHHQMDGSLASLREVQ-----QQLVHLSST 749
               ||||.|.        ||.||.:.      .........||.::.|     :|..|.|||
  Fly   688 RSKTPTPPPM--------PPALPLRNGLCATTGRRSFQQKSASQKQQQNNNTLRQFTHXSST 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 96/379 (25%)
leucine-rich repeat 84..107 CDD:275380 3/22 (14%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
leucine-rich repeat 132..155 CDD:275380 8/22 (36%)
leucine-rich repeat 156..179 CDD:275380 10/22 (45%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
leucine-rich repeat 204..251 CDD:275380 14/47 (30%)
leucine-rich repeat 252..275 CDD:275380 6/22 (27%)
leucine-rich repeat 276..299 CDD:275380 10/22 (45%)
leucine-rich repeat 300..323 CDD:275380 5/22 (23%)
leucine-rich repeat 388..411 CDD:275380 6/22 (27%)
trnNP_001261796.1 leucine-rich repeat 62..80 CDD:275380 3/40 (8%)
LRR 82..406 CDD:443914 100/367 (27%)
leucine-rich repeat 84..107 CDD:275380 9/22 (41%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 10/22 (45%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..204 CDD:275380 4/23 (17%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
leucine-rich repeat 253..276 CDD:275380 10/22 (45%)
leucine-rich repeat 277..300 CDD:275380 5/22 (23%)
leucine-rich repeat 301..322 CDD:275380 6/21 (29%)
leucine-rich repeat 326..350 CDD:275380 5/38 (13%)
leucine-rich repeat 351..373 CDD:275380 6/22 (27%)
LRRCT 382..434 CDD:214507 17/72 (24%)

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