DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and ltl

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster


Alignment Length:827 Identity:177/827 - (21%)
Similarity:296/827 - (35%) Gaps:212/827 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 CQC-----------SMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRNSITIGPALRQF 81
            |.|           |.:.|:.:.|:     ::||.:....|.::.:.|.....:.:    .:|.|
  Fly    25 CTCETGKAWNHVELSCEKLESFNAV-----VDSLANKLNADTNIDLKITHSQLDDL----EMRSF 80

  Fly    82 MKLEI----LRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKV 142
            ..:..    ||:..::|.::....|.||..:..|.:..|::..|.::......:||.||:.:.|:
  Fly    81 TDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKI 145

  Fly   143 LRMASSTFRHLTDLRRLNLADNSIVELVQRNF------FMLSRLKYLDLSGNPLQDLQ------- 194
            ..:....||.:..:..|.|..|.|..|.:.:|      ..|.|.:...|:|: |.||.       
  Fly   146 RAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLNGS-LHDLHNLESLFI 209

  Fly   195 --------PDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKR 251
                    .|...|..:|::|...|.:|:::...|.. :..|..:.:..|:.:..|: ..|:...
  Fly   210 NANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAG-MHSLETVHIHCNQLRSFDR-VLRNAVN 272

  Fly   252 LTKVLLDGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQ 316
            |::|:.|.|:|..:....|.....:..|.:..|.: |..|.|.|.:..|...:.|:|.:......
  Fly   273 LSEVMADNNELEYLAQDEFASCSKVETLQMGCNHI-KSLNSSLLPILKLKNANFSFNDIEEFSMA 336

  Fly   317 SIRSLSNLLTLNISGN----VLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTM 377
            .:..|.:|.||.:|.|    :|.|.|.::|        ..|....|....|..|.. |:|.:|  
  Fly   337 ELHGLRSLKTLQLSSNRIQRLLPDPRGVQE--------LMLVNLDLDNNRIDSLNG-ALAGLG-- 390

  Fly   378 PVGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGIS--EDTVLRIQGIRNVR 440
                     .||.||::||.|.:..:...|....|:.|||:.|||..:.  |.|:|....|..|.
  Fly   391 ---------NLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSLKILKVA 446

  Fly   441 LDNNPLICDECHMGKLINVVRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQN 505
            .:|                :.:|:..:...|:      |..|.:.|..|:      |..::...|
  Fly   447 YNN----------------ITKLEQDFKGLPV------LCQANLTNNQIS------TISSELVTN 483

  Fly   506 AASTSYNF---LE----------HGGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTREDH 557
            ....::|.   ||          ..|||.|..|..:                         :|..
  Fly   484 TRCKNHNVPGKLEIHLDDNPIMCDVGLNELCRLMAV-------------------------QEAR 523

  Fly   558 LNGSESKCLEKNLE-ATTITTLGNGSSPTTTTTLTLA--------TSPAAPNGPKTNGQGLSLSP 613
            :.| .|:|.|.:.| .|.:..|.|.:.|...|.|.|.        .....|:..|.|.:.|....
  Fly   524 IRG-RSQCFENDQEVCTVLPMLYNVNLPIMVTNLKLTGREVPKPMVRVIVPSLIKANNELLPPLI 587

  Fly   614 ANGSTPVHGISDDKGKEINFTFPVDDRVCTIDELMPSPPP-------PPQQHPHPNMGSLMYSVS 671
            |....||. ||.|.   :|   ||         :.|.|||       ||...|.|....:..:.|
  Fly   588 ATLGNPVL-ISTDL---VN---PV---------ISPLPPPLLLATTTPPPPLPLPVESEVEKNES 636

  Fly   672 HSPN---------SATTLAAVAAAAT-----------VIPPGAPSHSSMPTPTPTPAEAVVVV-- 714
            .:.|         :.||.:......|           :|...||:.::..|.||.|.|.:.|:  
  Fly   637 TTANPVPTNYTQETTTTTSTTTTTTTTETSSQVAPIEIITTTAPTTTTTSTTTPKPNETLPVIVE 701

  Fly   715 ----------------LPPPPLPPQQHHHQMDGSLASLREVQQQLVH 745
                            :||..|.|.|...:.:......||:::.|.|
  Fly   702 LQDPNPPDTTVNQTALVPPVVLDPLQQDLERERERERERELERDLDH 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 95/407 (23%)
leucine-rich repeat 84..107 CDD:275380 6/26 (23%)
leucine-rich repeat 108..131 CDD:275380 3/22 (14%)
leucine-rich repeat 132..155 CDD:275380 7/22 (32%)
leucine-rich repeat 156..179 CDD:275380 7/28 (25%)
leucine-rich repeat 180..203 CDD:275380 7/37 (19%)
leucine-rich repeat 204..251 CDD:275380 9/46 (20%)
leucine-rich repeat 252..275 CDD:275380 6/22 (27%)
leucine-rich repeat 276..299 CDD:275380 6/22 (27%)
leucine-rich repeat 300..323 CDD:275380 4/22 (18%)
leucine-rich repeat 388..411 CDD:275380 8/22 (36%)
ltlNP_729265.1 LRR 65..476 CDD:443914 102/466 (22%)
leucine-rich repeat 65..86 CDD:275380 3/24 (13%)
leucine-rich repeat 87..110 CDD:275380 6/22 (27%)
leucine-rich repeat 111..134 CDD:275380 3/22 (14%)
leucine-rich repeat 135..158 CDD:275380 7/22 (32%)
leucine-rich repeat 159..180 CDD:275380 6/20 (30%)
leucine-rich repeat 181..203 CDD:275380 7/22 (32%)
leucine-rich repeat 204..226 CDD:275380 2/21 (10%)
leucine-rich repeat 227..249 CDD:275380 5/22 (23%)
leucine-rich repeat 250..272 CDD:275380 4/22 (18%)
leucine-rich repeat 273..296 CDD:275380 6/22 (27%)
leucine-rich repeat 297..315 CDD:275380 5/18 (28%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 8/21 (38%)
leucine-rich repeat 367..391 CDD:275380 7/35 (20%)
leucine-rich repeat 392..415 CDD:275380 8/22 (36%)
leucine-rich repeat 416..439 CDD:275380 10/22 (45%)
leucine-rich repeat 440..462 CDD:275380 4/37 (11%)
leucine-rich repeat 463..483 CDD:275380 5/25 (20%)

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