DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Lapsyn

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_611561.1 Gene:Lapsyn / 37418 FlyBaseID:FBgn0034602 Length:343 Species:Drosophila melanogaster


Alignment Length:380 Identity:89/380 - (23%)
Similarity:148/380 - (38%) Gaps:95/380 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 LKYLDLSGNPLQ-DLQPDVFRDVPELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDK 243
            |:.|..:|..:| :::...:..:.:|..::|.:..||:: ||  ||...:..|||..|..:.|..
  Fly    14 LQLLHSAGFIIQSEVRKCTYGHIDKLLRIRCYDLDLKEV-PQ--NLKSSVEVLDLSHNRIRKLKT 75

  Fly   244 DEFR---DVKRLTKVLLDGNQLSVVVDQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDL 305
            ..|:   |:|.|  :|.|...|||.|. .|....||..:|||.|.|..:|.:.| ||..|..|.:
  Fly    76 SSFQRYTDIKFL--MLYDNMILSVEVG-TFEPLTSLQEIDLSNNGLTTIPLELF-QLPRLRNLYI 136

  Fly   306 SYNKLVRLEPQSIRS--LSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTH 368
            ..|:|..|..|::..  .:.|..||::|..|.:|                               
  Fly   137 DSNELTSLNLQALEKPIRAPLEYLNVAGCELQEL------------------------------- 170

  Fly   369 LAIADMGTMPVGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRI 433
               .|:|.:|        :|..||.|.|.|.|..::.:.....|:.:||:::||           
  Fly   171 ---PDLGILP--------KLWQLNASMNPLQNFRIDSLANMCHLQVIDLTKSQL----------- 213

  Fly   434 QGIRNVRLDNNPLICDECHMGKLINVVRQLQWKWDTYPICFLPKSLRGAEI-NNLDING--LHTC 495
                           .:|...::.|.:..|.......|:|.....:|...: .|..|:.  ..:|
  Fly   214 ---------------SQCGCQQVTNHLMMLGASPKFVPVCLEALDIRECPLPYNRTIHSPTFASC 263

  Fly   496 LTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSLVACFSKNRAR 550
            .|.:    |.|.:.|:.....|      ..||:.|||: ::|..::.|..|...|
  Fly   264 QTTL----QFAETRSFWLFGAG------CFGGVCFVLL-IVIFCVIHCRRKRAQR 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 66/271 (24%)
leucine-rich repeat 84..107 CDD:275380
leucine-rich repeat 108..131 CDD:275380
leucine-rich repeat 132..155 CDD:275380
leucine-rich repeat 156..179 CDD:275380
leucine-rich repeat 180..203 CDD:275380 4/23 (17%)
leucine-rich repeat 204..251 CDD:275380 15/49 (31%)
leucine-rich repeat 252..275 CDD:275380 8/22 (36%)
leucine-rich repeat 276..299 CDD:275380 10/22 (45%)
leucine-rich repeat 300..323 CDD:275380 6/24 (25%)
leucine-rich repeat 388..411 CDD:275380 7/22 (32%)
LapsynNP_611561.1 LRR <34..>214 CDD:443914 62/254 (24%)
leucine-rich repeat 39..59 CDD:275380 8/22 (36%)
leucine-rich repeat 60..83 CDD:275380 6/22 (27%)
leucine-rich repeat 84..107 CDD:275380 9/25 (36%)
leucine-rich repeat 108..130 CDD:275380 10/22 (45%)
leucine-rich repeat 131..154 CDD:275380 6/22 (27%)
leucine-rich repeat 157..178 CDD:275380 9/62 (15%)
leucine-rich repeat 179..202 CDD:275380 7/22 (32%)
Blue background indicates that the domain is not in the aligned region.

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