DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and 18w

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_476814.1 Gene:18w / 37277 FlyBaseID:FBgn0287775 Length:1385 Species:Drosophila melanogaster


Alignment Length:847 Identity:188/847 - (22%)
Similarity:308/847 - (36%) Gaps:220/847 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRNSITIGPALRQF-- 81
            |..|:.|....|||..|..         ||  |:.|.    ::.....|....:..|.||...  
  Fly   155 NNIRQLPEGVWCSMPSLQL---------LN--LTQNR----IRSAEFLGFSEKLCAGSALSNANG 204

  Fly    82 -----MKLEILRITDSNLPAIGAESFWG---LKYLRILDLSKNNITNITENNFRGQDNLLELDLS 138
                 .:|:.|.::.:.|.::  ...||   |:.|:.|.|..|||:.:..|...|..:|..|::|
  Fly   205 AVSGGSELQTLDVSFNELRSL--PDAWGASRLRRLQTLSLQHNNISTLAPNALAGLSSLRVLNIS 267

  Fly   139 KNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPD--VFRDV 201
            .|.::.:.|..|....:||.|:|..|.:.||.:.....|.:|..||||||.|.....|  .|..:
  Fly   268 YNHLVSLPSEAFAGNKELRELHLQGNDLYELPKGLLHRLEQLLVLDLSGNQLTSHHVDNSTFAGL 332

  Fly   202 PELKVLKCRNCQLKKINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVV 266
            ..|.||...|..|.:|..:.:..|..|..||:..|....:::..|..:..|..:.|..|:|..:.
  Fly   333 IRLIVLNLSNNALTRIGSKTFKELYFLQILDMRNNSIGHIEEGAFLPLYNLHTLNLAENRLHTLD 397

  Fly   267 DQLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISG 331
            :::|.....|..|.|:.|.::.|.:.:|...::|..||||.|:|..: |::::.||.|.||::..
  Fly   398 NRIFNGLYVLTKLTLNNNLVSIVESQAFRNCSDLKELDLSSNQLTEV-PEAVQDLSMLKTLDLGE 461

  Fly   332 NVLMDLREMRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIAD--MGTMPVGLLHPFKQLRYLNIS 394
            |.:.:.:  ..||..|                .|||.|.:.|  :|.:.||:.....:|..||::
  Fly   462 NQISEFK--NNTFRNL----------------NQLTGLRLIDNRIGNITVGMFQDLPRLSVLNLA 508

  Fly   395 GNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGKLINV 459
            .|.:.:......|...|:|.:.|.:|.|..|: .....:..:..:.|..|.|:            
  Fly   509 KNRIQSIERGAFDKNTEIEAIRLDKNFLTDIN-GIFATLASLLWLNLSENHLV------------ 560

  Fly   460 VRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTLAI 524
                   |..|  .|:|.:|:.     |||:|                    |::|        .
  Fly   561 -------WFDY--AFIPSNLKW-----LDIHG--------------------NYIE--------A 583

  Fly   525 LGGIIFVLIAVIILSLVACFSKNRARYYTREDHLNGSESKCLEKNLEATTITTLGNGSSPTTTTT 589
            ||....:...:.:.:|.|  |.||..........|..|...:..|:       :|...:.|....
  Fly   584 LGNYYKLQEEIRVTTLDA--SHNRITEIGAMSVPNSIELLFINNNI-------IGQIQANTFVDK 639

  Fly   590 LTLATSPAAPNG-PKTNGQGLSLSPANGSTPVHGISDDKGKEINF---TFPVDDRVCTIDELMPS 650
            ..||......|. .|.:...|.::|.:...||        .|...   .|..|   |:::.|...
  Fly   640 TRLARVDLYANVLSKISLNALRVAPVSAEKPV--------PEFYLGGNPFECD---CSMEWLQRI 693

  Fly   651 PPPPPQQHPH-PNMGSLMYSVSHSPNS-ATTLAAVAAA-----------------------ATVI 690
            .....:|||| .::|::...:.||.:: ...||:::|:                       ..||
  Fly   694 NNLTTRQHPHVVDLGNIECLMPHSRSAPLRPLASLSASDFVCKYESHCPPTCHCCEYEQCECEVI 758

  Fly   691 PPGAPS--HSS--------------MPTPTPTPAEAVVVVLPPPPLPPQQHHH------------ 727
            .||..|  |.:              ...|...|.:...:.|....:|..:..|            
  Fly   759 CPGNCSCFHDATWATNIVDCGRQDLAALPNRIPQDVSDLYLDGNNMPELEVGHLTGRRNLRALYL 823

  Fly   728 -------QMDGSLAS---------------------------LREV---QQQLVHLS-STLEPLV 754
                   ..:||||.                           |||:   ...|.|:| :|.||||
  Fly   824 NASNLMTLQNGSLAQLVNLRVLHLENNKLTALEGTEFRSLGLLRELYLHNNMLTHISNATFEPLV 888

  Fly   755 SV 756
            |:
  Fly   889 SL 890

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 102/390 (26%)
leucine-rich repeat 84..107 CDD:275380 6/25 (24%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 6/22 (27%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..203 CDD:275380 10/24 (42%)
leucine-rich repeat 204..251 CDD:275380 12/46 (26%)
leucine-rich repeat 252..275 CDD:275380 5/22 (23%)
leucine-rich repeat 276..299 CDD:275380 6/22 (27%)
leucine-rich repeat 300..323 CDD:275380 9/22 (41%)
leucine-rich repeat 388..411 CDD:275380 5/22 (23%)
18wNP_476814.1 leucine-rich repeat 66..91 CDD:275380
leucine-rich repeat 92..115 CDD:275380
LRR_8 115..181 CDD:404697 11/40 (28%)
leucine-rich repeat 116..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380 6/14 (43%)
leucine-rich repeat 171..201 CDD:275380 9/44 (20%)
LRR 210..592 CDD:443914 113/457 (25%)
leucine-rich repeat 212..236 CDD:275380 6/25 (24%)
leucine-rich repeat 237..260 CDD:275380 8/22 (36%)
leucine-rich repeat 261..284 CDD:275380 6/22 (27%)
leucine-rich repeat 285..308 CDD:275380 8/22 (36%)
leucine-rich repeat 309..334 CDD:275380 10/24 (42%)
leucine-rich repeat 335..358 CDD:275380 7/22 (32%)
leucine-rich repeat 359..382 CDD:275380 5/22 (23%)
leucine-rich repeat 383..406 CDD:275380 5/22 (23%)
leucine-rich repeat 407..430 CDD:275380 6/22 (27%)
leucine-rich repeat 431..451 CDD:275380 8/20 (40%)
leucine-rich repeat 454..477 CDD:275380 7/40 (18%)
leucine-rich repeat 478..499 CDD:275380 7/20 (35%)
leucine-rich repeat 502..525 CDD:275380 5/22 (23%)
leucine-rich repeat 526..548 CDD:275380 5/22 (23%)
leucine-rich repeat 590..617 CDD:275380 5/28 (18%)
leucine-rich repeat 618..641 CDD:275380 4/29 (14%)
leucine-rich repeat 642..689 CDD:275380 12/57 (21%)
LRRCT 679..736 CDD:214507 14/59 (24%)
LRR <775..>920 CDD:443914 21/116 (18%)
leucine-rich repeat 775..796 CDD:275380 2/20 (10%)
leucine-rich repeat 797..817 CDD:275380 3/19 (16%)
leucine-rich repeat 818..841 CDD:275380 4/22 (18%)
leucine-rich repeat 842..865 CDD:275380 0/22 (0%)
leucine-rich repeat 866..889 CDD:275380 10/22 (45%)
leucine-rich repeat 890..911 CDD:275380 0/1 (0%)
TIR 1045..1183 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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