DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Tlr6

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_997487.2 Gene:Tlr6 / 305353 RGDID:1303030 Length:806 Species:Rattus norvegicus


Alignment Length:677 Identity:144/677 - (21%)
Similarity:241/677 - (35%) Gaps:259/677 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 IGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTFRHLTDLRRLNL 161
            :|:.:.:..::..::|.|..|:|::.::.   ..:...|.||:|.:..:..|....|::||.|.|
  Rat    33 VGSMTQFSDEFESVVDYSNKNLTHVPKDL---SPSTKSLSLSQNSISDLQMSDISFLSELRVLRL 94

  Fly   162 ADNSIVELVQRNFFMLSR-LKYLDLSGNPLQDLQ--PDV--------FRDVPELKVLKCRNCQLK 215
            :.|.|..| ....|:|:| |:|||:|.|.||::.  |.|        |.|...|.|.|       
  Rat    95 SHNRIRRL-DFGVFLLNRDLEYLDVSHNQLQNISCCPMVNLKHLDLSFNDFEVLPVYK------- 151

  Fly   216 KINPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLD------------------GNQL 262
                :..||:. ||.|.|...:|:.||......: .|:.||||                  .|.|
  Rat   152 ----EFGNLMK-LSFLGLSAAKFRQLDLLPISHL-HLSCVLLDLVNYQIKDGETESLQVPNTNVL 210

  Fly   263 SVVV--DQLFRMQ-----KSLNHLDLSYNRLAKVPNDSFLQ--------------LTNLTF--LD 304
            .:|.  :.||.:|     .:|..|.||..:|    ||...|              |.|||.  ::
  Rat   211 HLVFHPNSLFSVQVNISVNALGCLQLSNIKL----NDKNCQSLIIFLSELTRGPTLLNLTLQHIE 271

  Fly   305 LSYNKLVRL------EPQSIRSLSNL-LTLNISGNVL---------------------------- 334
            .::...|||      .|....::.|| :|.:||....                            
  Rat   272 TNWKCFVRLLQFLWPRPVEYLNIYNLTITESISRETFIYVETVLKSLKIEHVTNQVFLFVKDALY 336

  Fly   335 -----MDLREMRETFEPLIY---------YFFLT-------------CS--KLFFQLIPQLTHL- 369
                 |::|.:..:..|.|:         :.||.             ||  |....||.|...| 
  Rat   337 SVFAEMNIRMLTLSDTPFIHMVCPEFPSTFAFLNFTQNVFTDSIFQGCSTLKRLETLILQRNGLK 401

  Fly   370 ----------AIADMGTMPVGL----LHPF-------KQLRYLNISGNSLNNTALEVIDPCRELE 413
                      .::.:.|:.|.|    .|.:       :.:|.||:|.|.|:::....:.|  :::
  Rat   402 NLFKVALMTKTMSSLETLDVSLNSLNSHVYDRTCAWAESIRVLNLSSNVLSDSVFRCLPP--KVK 464

  Fly   414 FLDLSRNQLHGISED-----------------------------TVLRI---------------- 433
            .|||..|::..|.:|                             :||.|                
  Rat   465 VLDLHNNRIVSIPKDVTHLQALQELNVASNFLTDLPGCGAFSSLSVLVIDHNSVSHPSSDFFQSC 529

  Fly   434 QGIRNVRLDNNPLICDECHMGKLINVV----RQLQWKW-DTYPICFLPKSLRGAEINNLDINGLH 493
            |.||::...|||..| .|.:.:.:..:    |::...| |:|. |..|.|::|..:.:..::.| 
  Rat   530 QNIRSITAGNNPFRC-TCELREFVKNIGQASREVVEGWPDSYR-CDYPDSIKGTPLQDFHMSPL- 591

  Fly   494 TCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSLVACF-------------- 544
            :|.|.:                      |.:..|...:|:|.|..||...|              
  Rat   592 SCDTIL----------------------LTVTIGATLLLLAAIGASLCLYFDLPWYLRMLWQWTQ 634

  Fly   545 SKNRARYYTREDHLNGSESKCLEKNLE 571
            :::|||....|:         |::||:
  Rat   635 TRHRARNIPLEE---------LQRNLQ 652

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 115/531 (22%)
leucine-rich repeat 84..107 CDD:275380 1/9 (11%)
leucine-rich repeat 108..131 CDD:275380 4/22 (18%)
leucine-rich repeat 132..155 CDD:275380 6/22 (27%)
leucine-rich repeat 156..179 CDD:275380 9/22 (41%)
leucine-rich repeat 180..203 CDD:275380 12/32 (38%)
leucine-rich repeat 204..251 CDD:275380 12/46 (26%)
leucine-rich repeat 252..275 CDD:275380 11/47 (23%)
leucine-rich repeat 276..299 CDD:275380 9/36 (25%)
leucine-rich repeat 300..323 CDD:275380 6/30 (20%)
leucine-rich repeat 388..411 CDD:275380 7/22 (32%)
Tlr6NP_997487.2 None

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