DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rdo and Tlr4

DIOPT Version :9

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_062051.2 Gene:Tlr4 / 29260 RGDID:3870 Length:835 Species:Rattus norvegicus


Alignment Length:741 Identity:163/741 - (21%)
Similarity:268/741 - (36%) Gaps:236/741 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 LFSLCIMPAMFSNTKRKCPT-ECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRN 70
            ||..|:.|...:......|. ..||...:|.:.              |:::....|.:.:.....
  Rat    15 LFLSCLRPGSLNPCIEVLPNITYQCMDQNLSKI--------------PHDIPYSTKNLDLSFNPL 65

  Fly    71 SITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLEL 135
            .|....:...|.:|:.|.::...:..|..:::.||..|..|.|:.|.|.:.:..:|.|..||..|
  Rat    66 KILRSYSFSNFSQLQWLDLSRCEIETIEDKAWHGLNQLSTLVLTGNPIKSFSPGSFSGLTNLENL 130

  Fly   136 DLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFM-LSRLKYLDLSGNPLQDLQPDVFR 199
            ...:.|:..:.......|..|::||:|.|.|.......:|. |:.|:::|||.|.:|        
  Rat   131 VAVETKMTSLEGFHIGQLISLKKLNVAHNLIHSFKLPEYFSNLTNLEHVDLSYNYIQ-------- 187

  Fly   200 DVPELKVLKCRNCQLKKINPQM-----YNLLPL------------LSELDLGRN----------- 236
                  .:..::.|..:.|||:     .:|.|:            |.||.|..|           
  Rat   188 ------TISVKDLQFLRENPQVNLSLDLSLNPIDSIQAQAFQGIRLHELTLRSNFNSSNVLKMCL 246

  Fly   237 --------------EFK------FLDK-----------DEFR---------DVKRL------TKV 255
                          |||      ..|:           ||||         |:..|      :.:
  Rat   247 QNMTGLHVHRLILGEFKNERNLESFDRSVMEGLCNVSIDEFRLTYINHFSDDIYNLNCLANISAM 311

  Fly   256 LLDGNQLSVVVD--QLFRMQK------------------------SLNHLDLSYNRLAKVPNDSF 294
            ...|..:..:.|  :.|:.|.                        :.|..|:|:.:|| :|:..:
  Rat   312 SFTGVHIKHIADVPRHFKWQSLSIIRCHLKPFPKLSLPFLKSWTLTTNREDISFGQLA-LPSLRY 375

  Fly   295 LQLT------------------NLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMR 341
            |.|:                  ||.:||||:|.:: |...:...|..|..|:...:.|..:.|  
  Rat   376 LDLSRNAMSFRGCCSYSDFGTNNLKYLDLSFNGVI-LMSANFMGLEELEYLDFQHSTLKKVTE-- 437

  Fly   342 ETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSL-NNTALEV 405
                   :..||:..||.: |....|:..| |...:.:||:    .|..|.::|||. :||...|
  Rat   438 -------FSVFLSLEKLLY-LDISYTNTKI-DFDGIFLGLI----SLNTLKMAGNSFKDNTLSNV 489

  Fly   406 IDPCRELEFLDLSRNQLHGISE---DTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQLQWKW 467
            ......|.|||||:.||..||.   ||:.|:| :.|:. .||.|..|..|..:|.: :|.|...:
  Rat   490 FTNTTNLTFLDLSKCQLEQISRGVFDTLYRLQ-LLNMS-HNNLLFLDPSHYKQLYS-LRTLDCSF 551

  Fly   468 DTYP-----ICFLPKSLRGAEINNLDINGLHTCL--------------TFITDEEQ--------N 505
            :...     :...||||   .:.||..|.: .|:              .|:.:.||        .
  Rat   552 NRIETSKGILQHFPKSL---AVFNLTNNSV-ACICEYQNFLQWVKDQKMFLVNVEQMKCASPIDM 612

  Fly   506 AASTSYNFLEHGGLNTLAILGGIIFV-LIAVIILSLVA---------------C--FSKNRARY- 551
            .||...:|..    :|..|...||.| :::|::::.||               |  :|:..:.| 
  Rat   613 KASLVLDFTN----STCYIYKTIISVSVVSVLVVATVAFLIYHFYFHLILIAGCKKYSRGESIYD 673

  Fly   552 ----YT--REDHLNGSESKCLEKNLE 571
                |:  .||.:...    |.||||
  Rat   674 AFVIYSSQNEDWVRNE----LVKNLE 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 7/22 (32%)
LRR_8 131..190 CDD:290566 18/59 (31%)
leucine-rich repeat 132..155 CDD:275380 4/22 (18%)
LRR_RI 151..422 CDD:238064 85/390 (22%)
leucine-rich repeat 156..179 CDD:275380 8/23 (35%)
LRR_8 178..262 CDD:290566 28/157 (18%)
leucine-rich repeat 180..203 CDD:275380 6/22 (27%)
leucine-rich repeat 204..251 CDD:275380 20/114 (18%)
leucine-rich repeat 252..275 CDD:275380 5/54 (9%)
LRR_8 274..334 CDD:290566 19/101 (19%)
leucine-rich repeat 276..299 CDD:275380 8/40 (20%)
LRR_4 298..342 CDD:289563 13/61 (21%)
leucine-rich repeat 300..323 CDD:275380 8/22 (36%)
leucine-rich repeat 388..411 CDD:275380 8/23 (35%)
Tlr4NP_062051.2 PLN00113 23..>456 CDD:215061 90/472 (19%)
LRR 1 54..75 2/20 (10%)
leucine-rich repeat 58..78 CDD:275380 2/19 (11%)
LRR 2 78..99 3/20 (15%)
leucine-rich repeat 79..102 CDD:275380 5/22 (23%)
LRR 3 102..123 6/20 (30%)
leucine-rich repeat 103..126 CDD:275380 7/22 (32%)
LRR 4 126..147 4/20 (20%)
leucine-rich repeat 127..150 CDD:275380 4/22 (18%)
LRR 5 150..171 6/20 (30%)
leucine-rich repeat 151..175 CDD:275380 8/23 (35%)
LRR 6 175..198 7/36 (19%)
leucine-rich repeat 176..204 CDD:275380 10/41 (24%)
LRR 7 204..224 2/19 (11%)
leucine-rich repeat 205..226 CDD:275380 2/20 (10%)
LRR 8 226..247 5/20 (25%)
leucine-rich repeat 256..310 CDD:275380 10/53 (19%)
LRR 9 372..381 2/8 (25%)
leucine-rich repeat 373..398 CDD:275380 2/24 (8%)
LRR 10 398..420 8/22 (36%)
leucine-rich repeat 399..421 CDD:275380 8/22 (36%)
LRR 11 421..442 4/29 (14%)
leucine-rich repeat 422..446 CDD:275380 6/32 (19%)
LRR 12 446..467 6/22 (27%)
leucine-rich repeat 447..470 CDD:275380 7/28 (25%)
LRR 13 470..491 8/20 (40%)
leucine-rich repeat 471..495 CDD:275380 8/23 (35%)
LRR_8 494..554 CDD:404697 23/62 (37%)
LRR 14 495..516 10/20 (50%)
leucine-rich repeat 496..519 CDD:275380 12/22 (55%)
LRR 15 519..540 8/22 (36%)
leucine-rich repeat 520..543 CDD:275380 8/24 (33%)
LRR 16 543..564 2/21 (10%)
leucine-rich repeat 544..567 CDD:275380 3/22 (14%)
TIR 672..813 CDD:214587 9/28 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG4641
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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