Sequence 1: | NP_001286024.1 | Gene: | rdo / 35077 | FlyBaseID: | FBgn0243486 | Length: | 757 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_062051.2 | Gene: | Tlr4 / 29260 | RGDID: | 3870 | Length: | 835 | Species: | Rattus norvegicus |
Alignment Length: | 741 | Identity: | 163/741 - (21%) |
---|---|---|---|
Similarity: | 268/741 - (36%) | Gaps: | 236/741 - (31%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 LFSLCIMPAMFSNTKRKCPT-ECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRN 70
Fly 71 SITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLEL 135
Fly 136 DLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFM-LSRLKYLDLSGNPLQDLQPDVFR 199
Fly 200 DVPELKVLKCRNCQLKKINPQM-----YNLLPL------------LSELDLGRN----------- 236
Fly 237 --------------EFK------FLDK-----------DEFR---------DVKRL------TKV 255
Fly 256 LLDGNQLSVVVD--QLFRMQK------------------------SLNHLDLSYNRLAKVPNDSF 294
Fly 295 LQLT------------------NLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMR 341
Fly 342 ETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSL-NNTALEV 405
Fly 406 IDPCRELEFLDLSRNQLHGISE---DTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQLQWKW 467
Fly 468 DTYP-----ICFLPKSLRGAEINNLDINGLHTCL--------------TFITDEEQ--------N 505
Fly 506 AASTSYNFLEHGGLNTLAILGGIIFV-LIAVIILSLVA---------------C--FSKNRARY- 551
Fly 552 ----YT--REDHLNGSESKCLEKNLE 571 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rdo | NP_001286024.1 | leucine-rich repeat | 84..107 | CDD:275380 | 5/22 (23%) |
leucine-rich repeat | 108..131 | CDD:275380 | 7/22 (32%) | ||
LRR_8 | 131..190 | CDD:290566 | 18/59 (31%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 4/22 (18%) | ||
LRR_RI | 151..422 | CDD:238064 | 85/390 (22%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 8/23 (35%) | ||
LRR_8 | 178..262 | CDD:290566 | 28/157 (18%) | ||
leucine-rich repeat | 180..203 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 204..251 | CDD:275380 | 20/114 (18%) | ||
leucine-rich repeat | 252..275 | CDD:275380 | 5/54 (9%) | ||
LRR_8 | 274..334 | CDD:290566 | 19/101 (19%) | ||
leucine-rich repeat | 276..299 | CDD:275380 | 8/40 (20%) | ||
LRR_4 | 298..342 | CDD:289563 | 13/61 (21%) | ||
leucine-rich repeat | 300..323 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 388..411 | CDD:275380 | 8/23 (35%) | ||
Tlr4 | NP_062051.2 | PLN00113 | 23..>456 | CDD:215061 | 90/472 (19%) |
LRR 1 | 54..75 | 2/20 (10%) | |||
leucine-rich repeat | 58..78 | CDD:275380 | 2/19 (11%) | ||
LRR 2 | 78..99 | 3/20 (15%) | |||
leucine-rich repeat | 79..102 | CDD:275380 | 5/22 (23%) | ||
LRR 3 | 102..123 | 6/20 (30%) | |||
leucine-rich repeat | 103..126 | CDD:275380 | 7/22 (32%) | ||
LRR 4 | 126..147 | 4/20 (20%) | |||
leucine-rich repeat | 127..150 | CDD:275380 | 4/22 (18%) | ||
LRR 5 | 150..171 | 6/20 (30%) | |||
leucine-rich repeat | 151..175 | CDD:275380 | 8/23 (35%) | ||
LRR 6 | 175..198 | 7/36 (19%) | |||
leucine-rich repeat | 176..204 | CDD:275380 | 10/41 (24%) | ||
LRR 7 | 204..224 | 2/19 (11%) | |||
leucine-rich repeat | 205..226 | CDD:275380 | 2/20 (10%) | ||
LRR 8 | 226..247 | 5/20 (25%) | |||
leucine-rich repeat | 256..310 | CDD:275380 | 10/53 (19%) | ||
LRR 9 | 372..381 | 2/8 (25%) | |||
leucine-rich repeat | 373..398 | CDD:275380 | 2/24 (8%) | ||
LRR 10 | 398..420 | 8/22 (36%) | |||
leucine-rich repeat | 399..421 | CDD:275380 | 8/22 (36%) | ||
LRR 11 | 421..442 | 4/29 (14%) | |||
leucine-rich repeat | 422..446 | CDD:275380 | 6/32 (19%) | ||
LRR 12 | 446..467 | 6/22 (27%) | |||
leucine-rich repeat | 447..470 | CDD:275380 | 7/28 (25%) | ||
LRR 13 | 470..491 | 8/20 (40%) | |||
leucine-rich repeat | 471..495 | CDD:275380 | 8/23 (35%) | ||
LRR_8 | 494..554 | CDD:404697 | 23/62 (37%) | ||
LRR 14 | 495..516 | 10/20 (50%) | |||
leucine-rich repeat | 496..519 | CDD:275380 | 12/22 (55%) | ||
LRR 15 | 519..540 | 8/22 (36%) | |||
leucine-rich repeat | 520..543 | CDD:275380 | 8/24 (33%) | ||
LRR 16 | 543..564 | 2/21 (10%) | |||
leucine-rich repeat | 544..567 | CDD:275380 | 3/22 (14%) | ||
TIR | 672..813 | CDD:214587 | 9/28 (32%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E2759_KOG4641 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |