Sequence 1: | NP_001286024.1 | Gene: | rdo / 35077 | FlyBaseID: | FBgn0243486 | Length: | 757 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_213845.6 | Gene: | Podnl1 / 288907 | RGDID: | 1307753 | Length: | 582 | Species: | Rattus norvegicus |
Alignment Length: | 514 | Identity: | 117/514 - (22%) |
---|---|---|---|
Similarity: | 192/514 - (37%) | Gaps: | 115/514 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 22 RKCPTECQCSMDD-LDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRNSITIGPALRQFMKLE 85
Fly 86 ILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLR--MASS 148
Fly 149 TFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRNCQ 213
Fly 214 LKK--INPQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKSL 276
Fly 277 NHLDLSYNRLAKVPND--SFLQLTNLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLRE 339
Fly 340 MRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSLNNTALE 404
Fly 405 VIDPC--RELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMG--KLINVVRQLQW 465
Fly 466 KWDTYPIC--FLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTL 522 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
rdo | NP_001286024.1 | leucine-rich repeat | 84..107 | CDD:275380 | 3/22 (14%) |
leucine-rich repeat | 108..131 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 131..190 | CDD:290566 | 17/60 (28%) | ||
leucine-rich repeat | 132..155 | CDD:275380 | 7/24 (29%) | ||
LRR_RI | 151..422 | CDD:238064 | 69/276 (25%) | ||
leucine-rich repeat | 156..179 | CDD:275380 | 5/22 (23%) | ||
LRR_8 | 178..262 | CDD:290566 | 19/85 (22%) | ||
leucine-rich repeat | 180..203 | CDD:275380 | 6/22 (27%) | ||
leucine-rich repeat | 204..251 | CDD:275380 | 8/48 (17%) | ||
leucine-rich repeat | 252..275 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 274..334 | CDD:290566 | 20/61 (33%) | ||
leucine-rich repeat | 276..299 | CDD:275380 | 8/24 (33%) | ||
LRR_4 | 298..342 | CDD:289563 | 12/43 (28%) | ||
leucine-rich repeat | 300..323 | CDD:275380 | 8/22 (36%) | ||
leucine-rich repeat | 388..411 | CDD:275380 | 7/24 (29%) | ||
Podnl1 | XP_213845.6 | leucine-rich repeat | 64..82 | CDD:275380 | 7/72 (10%) |
leucine-rich repeat | 83..106 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 84..143 | CDD:290566 | 17/58 (29%) | ||
leucine-rich repeat | 107..132 | CDD:275380 | 7/24 (29%) | ||
leucine-rich repeat | 133..177 | CDD:275380 | 11/46 (24%) | ||
LRR_8 | 152..214 | CDD:290566 | 14/61 (23%) | ||
LRR_RI | 175..451 | CDD:238064 | 71/308 (23%) | ||
leucine-rich repeat | 178..203 | CDD:275380 | 4/24 (17%) | ||
leucine-rich repeat | 204..224 | CDD:275380 | 4/19 (21%) | ||
LRR_8 | 224..285 | CDD:290566 | 21/63 (33%) | ||
leucine-rich repeat | 225..248 | CDD:275380 | 7/25 (28%) | ||
leucine-rich repeat | 249..274 | CDD:275380 | 8/24 (33%) | ||
leucine-rich repeat | 275..319 | CDD:275380 | 13/46 (28%) | ||
LRR_8 | 295..356 | CDD:290566 | 17/79 (22%) | ||
leucine-rich repeat | 298..317 | CDD:275380 | 3/18 (17%) | ||
leucine-rich repeat | 320..345 | CDD:275380 | 8/38 (21%) | ||
leucine-rich repeat | 346..390 | CDD:275380 | 11/48 (23%) | ||
LRR_8 | 365..427 | CDD:290566 | 11/61 (18%) | ||
leucine-rich repeat | 391..416 | CDD:275380 | 5/24 (21%) | ||
leucine-rich repeat | 417..440 | CDD:275380 | 6/22 (27%) | ||
LRR_8 | 437..498 | CDD:290566 | 13/45 (29%) | ||
leucine-rich repeat | 441..461 | CDD:275380 | 8/38 (21%) | ||
leucine-rich repeat | 462..487 | CDD:275380 | 1/1 (100%) | ||
LRR_8 | 488..543 | CDD:290566 | |||
leucine-rich repeat | 509..532 | CDD:275380 | |||
leucine-rich repeat | 533..556 | CDD:275380 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D243556at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.010 |