DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Tlr2

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_006501523.1 Gene:Tlr2 / 24088 MGIID:1346060 Length:794 Species:Mus musculus


Alignment Length:617 Identity:135/617 - (21%)
Similarity:239/617 - (38%) Gaps:147/617 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WLLFSLCIMPAMFSNTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPR 69
            ||.:.|..:..:||   ::|..:...|.|    ...:|.                       |..
Mouse    16 WLFWILVAITVLFS---KRCSAQESLSCD----ASGVCD-----------------------GRS 50

  Fly    70 NSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLE 134
            .|.|..|               |.|.|.          ::.||||.|.||.|...:.|...||..
Mouse    51 RSFTSIP---------------SGLTAA----------MKSLDLSFNKITYIGHGDLRACANLQV 90

  Fly   135 LDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDL-QPDVF 198
            |.|..:::..:....|..|..|..|:|:||.:..|....|..||.||||:|.|||.|.| ...:|
Mouse    91 LMLKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 155

  Fly   199 RDVPELKVLKCRN----CQLKKINPQMYNLLPLLSELD---LGRNEFKFLDKDEFRDVKRLTKVL 256
            .::..|:.|:..|    .::::|:   :..|..|:||:   |....::.......||:..||..|
Mouse   156 PNLTNLQTLRIGNVETFSEIRRID---FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 217

  Fly   257 LDGN-QLSVVVDQLFRMQKSLNHLDLSYNRLAK-----VPNDSF------LQLTNLTFLDLSYNK 309
            .:.. .|.:..|.|    .|:.:|:|....||:     :|.|..      |........|.|:|:
Mouse   218 SESAFLLEIFADIL----SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 278

  Fly   310 LVRLEPQSIRSLSNL----LTLNISG-------NVLMDLRE-----MRETFEPLIYYFFLTCSKL 358
            |::| .:.|..||.:    .|||..|       :|:.:|.:     :|....|..|.|:...:  
Mouse   279 LLKL-LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST-- 340

  Fly   359 FFQLIPQLTHLAI--ADMGTMPVGLLHPFKQLRYLNISGN-----SLNNTALEVIDPCRELEFLD 416
            .:.|:.::..:.:  :.:..:|.......|.|.:|::|.|     .|.|:|.:...|  .|:.|.
Mouse   341 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP--SLQTLV 403

  Fly   417 LSRNQLHGISE--DTVLRIQGIRNVRLDNNPL--ICDECHMGKLINVVRQLQWKWDTYPICFLPK 477
            ||:|.|..:.:  :.:|.::.:.::.:..|..  :.|.|            ||          |:
Mouse   404 LSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSC------------QW----------PE 446

  Fly   478 SLRGAEINNLDINGLHTCL--TFITDEEQNAASTSYN---------FLEHGGLNTLAILGGIIFV 531
            .:|...:::..|..:.||:  |....:..|....|::         ::....|.||........:
Mouse   447 KMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVL 511

  Fly   532 LIAVIILSLVACFSKNRARYYTREDHLNGSES 563
            |:..|..:.|:.|||::...:.:.:.|...::
Mouse   512 LVMKIRENAVSTFSKDQLGSFPKLETLEAGDN 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 103/421 (24%)
leucine-rich repeat 84..107 CDD:275380 3/22 (14%)
leucine-rich repeat 108..131 CDD:275380 9/22 (41%)
leucine-rich repeat 132..155 CDD:275380 5/22 (23%)
leucine-rich repeat 156..179 CDD:275380 8/22 (36%)
leucine-rich repeat 180..203 CDD:275380 11/23 (48%)
leucine-rich repeat 204..251 CDD:275380 11/53 (21%)
leucine-rich repeat 252..275 CDD:275380 6/23 (26%)
leucine-rich repeat 276..299 CDD:275380 7/33 (21%)
leucine-rich repeat 300..323 CDD:275380 7/22 (32%)
leucine-rich repeat 388..411 CDD:275380 8/27 (30%)
Tlr2XP_006501523.1 LRR <53..305 CDD:443914 77/284 (27%)
leucine-rich repeat 65..87 CDD:275378 9/21 (43%)
leucine-rich repeat 88..111 CDD:275378 5/22 (23%)
leucine-rich repeat 112..135 CDD:275378 8/22 (36%)
leucine-rich repeat 136..160 CDD:275378 11/23 (48%)
leucine-rich repeat 186..212 CDD:275380 6/25 (24%)
leucine-rich repeat 213..233 CDD:275380 6/23 (26%)
LRR <345..>565 CDD:443914 40/223 (18%)
leucine-rich repeat 372..398 CDD:275380 8/27 (30%)
leucine-rich repeat 399..424 CDD:275380 7/24 (29%)
leucine-rich repeat 448..468 CDD:275380 4/19 (21%)
leucine-rich repeat 469..488 CDD:275380 2/18 (11%)
leucine-rich repeat 489..510 CDD:275380 3/20 (15%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
LRRCT 543..596 CDD:214507 0/1 (0%)
TIR 650..794 CDD:214587
Blue background indicates that the domain is not in the aligned region.

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