DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Cd180

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_032559.2 Gene:Cd180 / 17079 MGIID:1194924 Length:661 Species:Mus musculus


Alignment Length:689 Identity:139/689 - (20%)
Similarity:256/689 - (37%) Gaps:231/689 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLFSLCIMPAMFSNTKRKC-------PTECQCSMDDLDRYQAICTKGGLNSL-LSPNELDVDVKV 62
            |.||..::|.:.:.|..:.       .|.||......|.:|   ::..|::| |:.|.| :.:..
Mouse    58 LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ---SQHRLDTLVLTANPL-IFMAE 118

  Fly    63 IIIRGPR------------NSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSK 115
            ..:.||:            :||...| |.....||.|.:..:::.:|.....:..:.|::||...
Mouse   119 TALSGPKALKHLFFIQTGISSIDFIP-LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN 182

  Fly   116 NNI--------------TNITEN----------------------NFRGQDNLL----------- 133
            |.|              ||::.|                      ||.|..|||           
Mouse   183 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIELGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 247

  Fly   134 ------------------------------ELDLSKNKVLRMASSTFRHLTDLRRLNLADNSIVE 168
                                          .::|.|:....::|:||...:.|:.|:|....:.|
Mouse   248 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 312

  Fly   169 LVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCR-NCQLKKINPQMYNLLPLLSELD 232
            | ......||.||.|.||.|..::|......:.|.|..|..: |.:..::.......|..|.|||
Mouse   313 L-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 376

  Fly   233 LGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKSLNH---LDLSYNRLAKVPNDSF 294
            |..::.      |..|...|               ||    ::|:|   |:||||....:..::|
Mouse   377 LSHDDI------ETSDCCNL---------------QL----RNLSHLQSLNLSYNEPLSLKTEAF 416

  Fly   295 LQLTNLTFLDLSYNKLVRLEPQS-IRSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKL 358
            .:...|..|||::.:|...:.|| .::|..|..||:| :.|:|:                 .|:.
Mouse   417 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS-HSLLDI-----------------SSEQ 463

  Fly   359 FFQLIPQLTHL----------------AIADMGTMPVGLL----------HPFKQLRYLN---IS 394
            .|..:|.|.||                ::..:|.:.:.:|          |.|..|:.:|   :|
Mouse   464 LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 528

  Fly   395 GNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGKLINV 459
            .|.|.::::|.:...:.: :|:|:.|::..|....:..:...|.:.|..|||.| .|.     |:
Mouse   529 HNRLTSSSIEALSHLKGI-YLNLASNRISIILPSLLPILSQQRTINLRQNPLDC-TCS-----NI 586

  Fly   460 ---------VRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLE 515
                     :::|:...||  :|..|..|||..::::.:    :|                    
Mouse   587 YFLEWYKENMQKLEDTEDT--LCENPPLLRGVRLSDVTL----SC-------------------- 625

  Fly   516 HGGLNTLAILGGIIFVLIAVIILSLVACFSKNRARYYTR 554
                 ::|.: ||.|:::.:::.:::..|:   .:|:.|
Mouse   626 -----SMAAV-GIFFLIVFLLVFAILLIFA---VKYFLR 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 101/499 (20%)
leucine-rich repeat 84..107 CDD:275380 4/22 (18%)
leucine-rich repeat 108..131 CDD:275380 11/58 (19%)
leucine-rich repeat 132..155 CDD:275380 7/63 (11%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..203 CDD:275380 7/22 (32%)
leucine-rich repeat 204..251 CDD:275380 11/47 (23%)
leucine-rich repeat 252..275 CDD:275380 3/22 (14%)
leucine-rich repeat 276..299 CDD:275380 8/25 (32%)
leucine-rich repeat 300..323 CDD:275380 8/23 (35%)
leucine-rich repeat 388..411 CDD:275380 6/25 (24%)
Cd180NP_032559.2 leucine-rich repeat 38..57 CDD:275380
LRR 1 54..75 5/16 (31%)
leucine-rich repeat 58..78 CDD:275380 5/19 (26%)
LRR 2 78..99 5/23 (22%)
leucine-rich repeat 79..102 CDD:275380 5/25 (20%)
LRR 3 102..123 5/21 (24%)
leucine-rich repeat 103..126 CDD:275380 7/23 (30%)
LRR 4 126..147 4/21 (19%)
leucine-rich repeat 127..150 CDD:275380 4/23 (17%)
LRR 5 150..171 4/20 (20%)
leucine-rich repeat 151..174 CDD:275380 4/22 (18%)
LRR 6 174..195 5/20 (25%)
leucine-rich repeat 175..201 CDD:275380 5/25 (20%)
LRR 194..559 CDD:443914 84/409 (21%)
LRR 7 201..221 2/19 (11%)
leucine-rich repeat 224..275 CDD:275380 6/50 (12%)
LRR 8 275..296 5/20 (25%)
leucine-rich repeat 276..299 CDD:275380 5/22 (23%)
LRR 9 299..321 5/22 (23%)
leucine-rich repeat 300..322 CDD:275380 6/22 (27%)
LRR 10 322..343 7/20 (35%)
leucine-rich repeat 323..346 CDD:275380 7/22 (32%)
LRR 11 346..366 3/19 (16%)
leucine-rich repeat 347..371 CDD:275380 4/23 (17%)
LRR 12 371..391 8/40 (20%)
leucine-rich repeat 372..397 CDD:275380 11/49 (22%)
LRR 13 397..418 7/20 (35%)
leucine-rich repeat 398..421 CDD:275380 6/22 (27%)
LRR 14 421..442 7/20 (35%)
leucine-rich repeat 422..446 CDD:275380 8/23 (35%)
LRR 15 446..466 7/37 (19%)
leucine-rich repeat 447..470 CDD:275380 8/40 (20%)
LRR 16 470..493 3/22 (14%)
leucine-rich repeat 471..497 CDD:275380 3/25 (12%)
LRR 17 497..518 3/20 (15%)
leucine-rich repeat 498..521 CDD:275380 4/22 (18%)
LRR 18 521..544 5/22 (23%)
leucine-rich repeat 522..545 CDD:275380 5/22 (23%)
LRR 19 546..566 4/20 (20%)
PCC 549..>623 CDD:188093 19/81 (23%)
Blue background indicates that the domain is not in the aligned region.

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