DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Tlr8

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_573475.2 Gene:Tlr8 / 170744 MGIID:2176887 Length:1032 Species:Mus musculus


Alignment Length:883 Identity:183/883 - (20%)
Similarity:291/883 - (32%) Gaps:402/883 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NTKRKCPTECQCSMDDLDRYQAICTKGGLNS-------LLSPNELDV----------DVKVI--- 63
            |.|::.|.|.:..|:        .|:|.|.|       ||..|:|..          ::.:|   
Mouse    97 NAKQQHPNENKNGMN--------ITEGALLSLRNLTVLLLEDNQLYTIPAGLPESLKELSLIQNN 153

  Fly    64 IIRGPRNSITIGPALRQFMKL-----------EILRITDSNLPAIGAESFWGLKYLRILDLSKNN 117
            |.:..:|: |.|  ||...:|           :..::.|.        :|..|.:|::|.||.||
Mouse   154 IFQVTKNN-TFG--LRNLERLYLGWNCYFKCNQTFKVEDG--------AFKNLIHLKVLSLSFNN 207

  Fly   118 ---------------------ITNITENNFRGQDNLLELDLS-----------------KNKVLR 144
                                 |.|||:.:|:|.:||..||||                 :|..:.
Mouse   208 LFYVPPKLPSSLRKLFLSNAKIMNITQEDFKGLENLTLLDLSGNCPRCYNAPFPCTPCKENSSIH 272

  Fly   145 MASSTFRHLTDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPL-QDLQPDVF-RDVPELKVL 207
            :....|:.||.|..|||:..|:..:....|..||.||.|.|..|.| |::....| ..:|.|::|
Mouse   273 IHPLAFQSLTQLLYLNLSSTSLRTIPSTWFENLSNLKELHLEFNYLVQEIASGAFLTKLPSLQIL 337

  Fly   208 ----------------------KCRNC-----------QLKKINPQMYNLLPLLSELDLGRNEFK 239
                                  |.|:.           :|||.:.:....||.|:.::||.|..:
Mouse   338 DLSFNFQYKEYLQFINISSNFSKLRSLKKLHLRGYVFRELKKKHFEHLQSLPNLATINLGINFIE 402

  Fly   240 FLDKDEFRDVKRLTKVLLDGNQLSVVVD------------------------------------- 267
            .:|...|::..:|..:.|.||:::.|:|                                     
Mouse   403 KIDFKAFQNFSKLDVIYLSGNRIASVLDGTDYSSWRNRLRKPLSTDDDEFDPHVNFYHSTKPLIK 467

  Fly   268 ---------------QLFRMQKS--------------------------------LNHLDLSYNR 285
                           .:|.:.||                                :.:|||:.||
Mouse   468 PQCTAYGKALDLSLNNIFIIGKSQFEGFQDIACLNLSFNANTQVFNGTEFSSMPHIKYLDLTNNR 532

  Fly   286 LAKVPNDSFLQLTNLTFLDLSYNKL------VRLEPQSIRSLSNLLTLNISGNVLMDLREMRE-- 342
            |....|::|..|.:|..||||:|..      |......|::|.||..||:|.|.:..|.|..|  
Mouse   533 LDFDDNNAFSDLHDLEVLDLSHNAHYFSIAGVTHRLGFIQNLINLRVLNLSHNGIYTLTEESELK 597

  Fly   343 --TFEPLIY---------------YFFLTCSKLFFQLIPQLTHLAIA--DMGTMPVG-LLHPFKQ 387
              :.:.|::               |:.:      |:.:..|..|.::  ::..:|.| .|:..:.
Mouse   598 SISLKELVFSGNRLDRLWNANDGKYWSI------FKSLQNLIRLDLSYNNLQQIPNGAFLNLPQS 656

  Fly   388 LRYLNISGNSL---NNTALEVIDPCRELEFLDLSRNQLHGI---------SEDTVLR-------- 432
            |:.|.||||.|   |.|.|:...   .|..||||||:|:.:         |.:|:|.        
Mouse   657 LQELLISGNKLRFFNWTLLQYFP---HLHLLDLSRNELYFLPNCLSKFAHSLETLLLSHNHFSHL 718

  Fly   433 ----IQGIRN-VRLD--------------------NNPLI----------CD------------E 450
                :...|| |.||                    |..::          ||            .
Mouse   719 PSGFLSEARNLVHLDLSFNTIKMINKSSLQTKMKTNLSILELHGNYFDCTCDISDFRSWLDENLN 783

  Fly   451 CHMGKLINVVRQLQWKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLE 515
            ..:.||:||            ||..|...:...|.:||   |.||   ::|              
Mouse   784 ITIPKLVNV------------ICSNPGDQKSKSIMSLD---LTTC---VSD-------------- 816

  Fly   516 HGGLNTLAILGGIIFVLIAVIILSLVA--------------CFSK-------------------- 546
                .|.|:|..:.|:..::::|:.:.              |.:|                    
Mouse   817 ----TTAAVLFFLTFLTTSMVMLAALVHHLFYWDVWFIYHMCSAKLKGYRTSSTSQTFYDAYISY 877

  Fly   547 ------------NRARYYTREDHLNGSESK----CLEK 568
                        |..||     ||..||.|    |||:
Mouse   878 DTKDASVTDWVINELRY-----HLEESEDKSVLLCLEE 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 134/617 (22%)
leucine-rich repeat 84..107 CDD:275380 4/33 (12%)
leucine-rich repeat 108..131 CDD:275380 12/43 (28%)
leucine-rich repeat 132..155 CDD:275380 8/39 (21%)
leucine-rich repeat 156..179 CDD:275380 7/22 (32%)
leucine-rich repeat 180..203 CDD:275380 8/24 (33%)
leucine-rich repeat 204..251 CDD:275380 15/79 (19%)
leucine-rich repeat 252..275 CDD:275380 7/74 (9%)
leucine-rich repeat 276..299 CDD:275380 9/22 (41%)
leucine-rich repeat 300..323 CDD:275380 9/28 (32%)
leucine-rich repeat 388..411 CDD:275380 10/25 (40%)
Tlr8NP_573475.2 LRR 1 41..61
LRR 2 62..85
leucine-rich repeat 65..88 CDD:275380
LRR 66..484 CDD:443914 84/405 (21%)
LRR 3 87..109 4/11 (36%)
leucine-rich repeat 89..122 CDD:275380 9/32 (28%)
LRR 4 120..143 4/22 (18%)
leucine-rich repeat 123..143 CDD:275380 4/19 (21%)
leucine-rich repeat 144..167 CDD:275380 6/25 (24%)
LRR 5 145..165 5/22 (23%)
LRR 6 166..194 4/35 (11%)
leucine-rich repeat 168..197 CDD:275380 4/36 (11%)
LRR 7 195..218 7/22 (32%)
leucine-rich repeat 198..218 CDD:275380 6/19 (32%)
leucine-rich repeat 219..242 CDD:275380 6/22 (27%)
LRR 8 220..239 5/18 (28%)
LRR 9 240..267 6/26 (23%)
leucine-rich repeat 243..283 CDD:275380 8/39 (21%)
LRR 10 281..304 8/22 (36%)
leucine-rich repeat 284..307 CDD:275380 7/22 (32%)
LRR 11 306..329 9/22 (41%)
leucine-rich repeat 308..327 CDD:275380 7/18 (39%)
LRR 12 331..360 3/28 (11%)
leucine-rich repeat 334..363 CDD:275380 3/28 (11%)
LRR 13 361..384 4/22 (18%)
leucine-rich repeat 364..390 CDD:275380 4/25 (16%)
LRR 14 388..411 8/22 (36%)
leucine-rich repeat 391..414 CDD:275380 6/22 (27%)
LRR 15 413..436 6/22 (27%)
leucine-rich repeat 465..497 CDD:275380 3/31 (10%)
LRR 16 471..494 3/22 (14%)
LRR_8 501..555 CDD:404697 14/53 (26%)
leucine-rich repeat 501..522 CDD:275380 0/20 (0%)
LRR 17 520..543 8/22 (36%)
leucine-rich repeat 523..546 CDD:275380 9/22 (41%)
LRR <532..791 CDD:443914 62/267 (23%)
LRR 18 545..572 7/26 (27%)
leucine-rich repeat 547..576 CDD:275380 9/28 (32%)
LRR 19 574..598 10/23 (43%)
leucine-rich repeat 577..600 CDD:275380 8/22 (36%)
LRR 20 600..621 1/20 (5%)
leucine-rich repeat 601..631 CDD:275380 3/35 (9%)
LRR 21 629..652 4/22 (18%)
leucine-rich repeat 632..656 CDD:275380 5/23 (22%)
LRR 22 654..677 10/22 (45%)
leucine-rich repeat 657..680 CDD:275380 10/25 (40%)
LRR 23 678..701 8/25 (32%)
leucine-rich repeat 681..704 CDD:275380 8/22 (36%)
LRR 24 702..725 3/22 (14%)
leucine-rich repeat 705..728 CDD:275380 2/22 (9%)
LRR 25 727..749 5/21 (24%)
leucine-rich repeat 729..748 CDD:275380 3/18 (17%)
LRR 26 752..776 3/23 (13%)
TIR 871..1007 CDD:214587 11/45 (24%)
Blue background indicates that the domain is not in the aligned region.

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