DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and Tlr7

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001277687.1 Gene:Tlr7 / 170743 MGIID:2176882 Length:1053 Species:Mus musculus


Alignment Length:726 Identity:164/726 - (22%)
Similarity:268/726 - (36%) Gaps:230/726 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 NTKRKCPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRG--PR------------ 69
            |.....||....::.:|..|..|..|...|...:.|||    :|:.:.|  ||            
Mouse   217 NNVTAVPTTLPPNLLELYLYNNIIKKIQENDFNNLNEL----QVLDLSGNCPRCYNVPYPCTPCE 277

  Fly    70 ------------NSITIGPALRQFMKLEILRITDSNLPAIGAESFWGLKYLRILDLSKNNIT-NI 121
                        ||:|         :|::||:..::|..:....|..::.|:.||||:|.:. .|
Mouse   278 NNSPLQIHDNAFNSLT---------ELKVLRLHSNSLQHVPPTWFKNMRNLQELDLSQNYLAREI 333

  Fly   122 TENNF-RGQDNLLELDLSKN----------------------KVLRMASSTFRHLTD-------- 155
            .|..| ....||:|||.|.|                      |:||:....|:.|.:        
Mouse   334 EEAKFLHFLPNLVELDFSFNYELQVYHASITLPHSLSSLENLKILRVKGYVFKELKNSSLSVLHK 398

  Fly   156 LRRLNLAD--NSIVELVQRNFFM-LSRLKYLDLSGNPLQ------------DLQPDVFRDVPE-L 204
            |.||.:.|  .:.:::...|.|. ...||.:|||.|.:.            :.|..|.|..|: |
Mouse   399 LPRLEVLDLGTNFIKIADLNIFKHFENLKLIDLSVNKISPSEESREVGFCPNAQTSVDRHGPQVL 463

  Fly   205 KVLK-------CRNCQLKKINPQMYNLLPLLSE-------LDLGRNEFKFLDKDEFRDVKRLTKV 255
            :.|.       .|:|:.|...|..:  |||.::       |||.||...|:...:|:.:..|..:
Mouse   464 EALHYFRYDEYARSCRFKNKEPPSF--LPLNADCHIYGQTLDLSRNNIFFIKPSDFQHLSFLKCL 526

  Fly   256 LLDGNQLSVVVD--QLFRMQKSLNHLDLSYNRLAKVPNDSFLQLTNLTFLDLSYN---------- 308
            .|.||.:...::  :|:.: :.|.:||.|.|||..:.:.:|.:|.:|..||||.|          
Mouse   527 NLSGNTIGQTLNGSELWPL-RELRYLDFSNNRLDLLYSTAFEELQSLEVLDLSSNSHYFQAEGIT 590

  Fly   309 ------KLVRL-------------------EPQSIR-------------------------SLSN 323
                  |.:||                   |..|:|                         :|.|
Mouse   591 HMLNFTKKLRLLDKLMMNDNDISTSASRTMESDSLRILEFRGNHLDVLWRAGDNRYLDFFKNLFN 655

  Fly   324 LLTLNISGNVLMDL-REMRETFEPLIYYFFLTCSKL---FFQLIPQLTHLAIADMG-----TMPV 379
            |..|:||.|.|..| .|:.|...|.:....|..:.|   |:..:..|.||.|.|:.     .:|.
Mouse   656 LEVLDISRNSLNSLPPEVFEGMPPNLKNLSLAKNGLKSFFWDRLQLLKHLEILDLSHNQLTKVPE 720

  Fly   380 GLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISE----DTVLRIQGIRNVR 440
            .|.:..|.|..|.:..|.:.......::...:|.:||:|.|::..|.:    :.||  ..:..:.
Mouse   721 RLANCSKSLTTLILKHNQIRQLTKYFLEDALQLRYLDISSNKIQVIQKTSFPENVL--NNLEMLV 783

  Fly   441 LDNNPLICDECHMGKLINVVRQLQWKW-----DTYP------ICFLPKSLRGAEINNLDINGLHT 494
            |.:|..:|: |.....:       | |     .|.|      .|..|.:.:|..:.:||   |:|
Mouse   784 LHHNRFLCN-CDAVWFV-------W-WVNHTDVTIPYLATDVTCVGPGAHKGQSVISLD---LYT 836

  Fly   495 CLTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIILSL-------VACFSKNRARYY 552
            |...:|:....:.|.|                .::|:::.:....|       :..|.|.:.:.|
Mouse   837 CELDLTNLILFSVSIS----------------SVLFLMVVMTTSHLFFWDMWYIYYFWKAKIKGY 885

  Fly   553 TREDHLNGSES 563
               .||...||
Mouse   886 ---QHLQSMES 893

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 124/537 (23%)
leucine-rich repeat 84..107 CDD:275380 5/22 (23%)
leucine-rich repeat 108..131 CDD:275380 9/24 (38%)
leucine-rich repeat 132..155 CDD:275380 11/44 (25%)
leucine-rich repeat 156..179 CDD:275380 6/25 (24%)
leucine-rich repeat 180..203 CDD:275380 9/34 (26%)
leucine-rich repeat 204..251 CDD:275380 16/60 (27%)
leucine-rich repeat 252..275 CDD:275380 5/24 (21%)
leucine-rich repeat 276..299 CDD:275380 9/22 (41%)
leucine-rich repeat 300..323 CDD:275380 13/82 (16%)
leucine-rich repeat 388..411 CDD:275380 3/22 (14%)
Tlr7NP_001277687.1 PRK15370 <35..>246 CDD:185268 7/28 (25%)
leucine-rich repeat 51..72 CDD:275380
leucine-rich repeat 73..93 CDD:275380
leucine-rich repeat 94..131 CDD:275380
leucine-rich repeat 132..155 CDD:275380
PLN00113 177..>789 CDD:215061 138/589 (23%)
leucine-rich repeat 177..208 CDD:275380
leucine-rich repeat 209..229 CDD:275380 3/11 (27%)
leucine-rich repeat 230..253 CDD:275380 5/22 (23%)
leucine-rich repeat 254..294 CDD:275380 8/52 (15%)
leucine-rich repeat 295..318 CDD:275380 5/22 (23%)
leucine-rich repeat 319..344 CDD:275380 9/24 (38%)
leucine-rich repeat 345..401 CDD:275380 12/55 (22%)
leucine-rich repeat 402..425 CDD:275380 4/22 (18%)
LRR 487..>789 CDD:443914 72/306 (24%)
leucine-rich repeat 500..522 CDD:275380 7/21 (33%)
leucine-rich repeat 523..547 CDD:275380 5/24 (21%)
leucine-rich repeat 548..571 CDD:275380 9/22 (41%)
leucine-rich repeat 572..601 CDD:275380 7/28 (25%)
leucine-rich repeat 602..624 CDD:275380 1/21 (5%)
leucine-rich repeat 625..655 CDD:275380 2/29 (7%)
leucine-rich repeat 656..680 CDD:275380 9/23 (39%)
leucine-rich repeat 681..704 CDD:275380 4/22 (18%)
leucine-rich repeat 705..728 CDD:275380 5/22 (23%)
leucine-rich repeat 753..778 CDD:275380 8/26 (31%)
PCC 757..>841 CDD:188093 22/97 (23%)
TIR 894..1039 CDD:214587 164/726 (23%)
Blue background indicates that the domain is not in the aligned region.

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