DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and tpbgl

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:NP_001245160.1 Gene:tpbgl / 100884149 ZFINID:ZDB-GENE-120209-3 Length:313 Species:Danio rerio


Alignment Length:355 Identity:76/355 - (21%)
Similarity:127/355 - (35%) Gaps:117/355 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   242 DKDEFR---DVKRLTKVL-LDGNQLSVVVDQLFRMQ----KSLNHLDLSYNRLAKVPNDSFLQLT 298
            |.||.:   :|.|.|::| |:...:||::::.|...    .||:.|.|..|.:..:.:.:|..|.
Zfish    27 DSDEIKLPLEVPRRTQILTLNNVNMSVLIERAFSANGTNAHSLHELSLRDNNIQVIQSCAFCGLH 91

  Fly   299 NLTFLDLSYNKLVRLEPQSIRSLSNLLTLNISGNVLMDLREMRETFEPLIYYFFLTCSKLFFQLI 363
            .|..||||.|:|..:.|::...|:.|..||:|                  |......:......:
Zfish    92 RLHLLDLSRNRLEDVHPEAFSELNQLRNLNLS------------------YTLTAAGANQLSSAL 138

  Fly   364 PQLTHLAIADMG-----TMPVGLLHPFKQLRYLNISGNSLNNTALEVIDPCRELEFLDLSRNQLH 423
            ..|::|.|.|:.     |:|:.....| .|..||::.||:..                |..|:|.
Zfish   139 DSLSNLQILDLSGNRLKTIPLSGFGKF-SLTMLNLTHNSITT----------------LDTNELT 186

  Fly   424 GISEDTVLRIQGIRNVRLDNNPLIC---------------DECHMGKLINVVRQLQWKWDTYPIC 473
            .:||...:|      |.|.:||..|               .:|...|.:.              |
Zfish   187 KLSEYREMR------VYLSHNPFDCRCDRLREFHDWLKNSSQCADSKNLR--------------C 231

  Fly   474 FLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGIIFVLIAVIIL 538
            .|||..:...:.::|      |        :|..|              .:|.||:..||.|:.|
Zfish   232 ALPKVQKDLRVESVD------C--------KNVGS--------------FVLLGIVLALIGVVFL 268

  Fly   539 SLVACFSKNRARYYTREDHLNGSESKCLEK 568
            .::....:...|:      ||.....|.::
Zfish   269 MVLYLNRRGIKRW------LNNIREACRDQ 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 53/216 (25%)
leucine-rich repeat 84..107 CDD:275380
leucine-rich repeat 108..131 CDD:275380
leucine-rich repeat 132..155 CDD:275380
leucine-rich repeat 156..179 CDD:275380
leucine-rich repeat 180..203 CDD:275380
leucine-rich repeat 204..251 CDD:275380 4/11 (36%)
leucine-rich repeat 252..275 CDD:275380 6/27 (22%)
leucine-rich repeat 276..299 CDD:275380 6/22 (27%)
leucine-rich repeat 300..323 CDD:275380 9/22 (41%)
leucine-rich repeat 388..411 CDD:275380 5/22 (23%)
tpbglNP_001245160.1 LRRNT 11..42 CDD:214470 5/14 (36%)
leucine-rich repeat 42..68 CDD:275380 5/25 (20%)
LRR <64..>203 CDD:443914 42/179 (23%)
leucine-rich repeat 69..92 CDD:275380 6/22 (27%)
leucine-rich repeat 93..116 CDD:275380 9/22 (41%)
leucine-rich repeat 117..143 CDD:275380 6/43 (14%)
leucine-rich repeat 144..166 CDD:275380 6/22 (27%)
leucine-rich repeat 167..190 CDD:275380 8/38 (21%)
LRRCT 201..246 CDD:214507 9/58 (16%)
Blue background indicates that the domain is not in the aligned region.

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