Protein Alignment rdo and LOC100496647

DIOPT Version :10

• Sequence 1: NP_001286024.1
• Gene: rdo / 35077
• FlyBaseID: FBgn0243486
• Length: 757
• Species: Drosophila melanogaster
• Sequence 2: XP_002940742.3
• Gene: LOC100496647 / 100496647
• -ID: -
• Length: 879
• Species: Xenopus tropicalis
• Alignment Length: 566
• Identity: 142/566 - (25%)
• Similarity: 217/566 - (38%)
• Gaps: 152/566 - (26%)

  Fly    34 DLDRYQAICTKGGLNSL------LSPNELDVDVKVIIIRGPRNSITIGPALRQFMKLEILRITDS 92
            |:|:.|..|  |.||..      |..:.:........|:.|.||..:|..   ...|:||.::..
 Frog   250 DVDKMQKFC--GALNGTKMMQLKLDSHGMGAGFGYNHIKDPDNSTFVGLV---NSNLQILDLSTG 309

  Fly    93 NLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTFRHLTDLR 157
            |:.::...:|..|..|::|:|::|.|..|....|.|.::|:.|:||.|.:..:...:|..|.||.
 Frog   310 NIFSLKPYTFGNLTVLKLLNLAENKINRIENKAFCGLNSLITLNLSYNLLGELYDYSFEGLPDLT 374

  Fly   158 RLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRNCQLKKINPQ-M 221
            .::|..|.|..:....|..|.:|.||||.||.::.:  ..|..:..:..:.....:||.|:.. :
 Frog   375 TIDLQQNHIGAIQNNAFKSLEKLNYLDLRGNAMKKV--TFFEALIPITYIFFGGNKLKSIDSSYV 437

  Fly   222 YNLLPLLSELDLGRNE----FKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQK--SLNHLD 280
            |:....|||.||  |:    ||.|      ....|..|:|..|:|||.... |.:.|  ||.|||
 Frog   438 YSTFLDLSENDL--NDLGGLFKIL------QYPLLQYVILKRNRLSVCYSH-FSISKNNSLLHLD 493

  Fly   281 LSYNRLAKVPNDS-----FLQLTNLTFLDLSYNKLVRLEPQSI-RSLSNLLTLNISGNVLMDLRE 339
            ||.|.:..:.::.     |..|:.|..|.|: |..:|..|:.| ..|.:|.|||:|.|:
 Frog   494 LSDNMINLIWDNGQCLNVFSNLSLLGLLKLN-NNFLRYLPEGIFNGLESLQTLNLSSNL------ 551

  Fly   340 MRETFEPLIYYFFLTCSKLFFQLIPQLTHLAIADMGTMPVGLLHPFKQLRYLNISGNSLNNTALE 404
                                      ||||.   .|..|.
 Frog   552 --------------------------LTHLM---PGVFPT------------------------- 562

  Fly   405 VIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGKLINVVRQ-----LQ 464
                  .|:.:|||:|||:..|....|   .::.:.|.:|..||| |.:...|..:.:     |.
 Frog   563 ------NLDTVDLSKNQLYSPSPKVFL---SVKKLDLTHNQYICD-CFLLDFIMWLNETNATLLG 617

  Fly   465 WKWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAASTSYNFLEHGGLNTLAILGGII 529
            ..:|||  |..|.        |.....||.......|:::                .|..|...:
 Frog   618 SPYDTY--CMYPP--------NFLFQPLHILTVENCDDDK----------------VLMPLMFSL 656

  Fly   530 FVLIAVIILSLVA-----------CFSKNRARYYTREDHLNGSESK 564
            |||.:..||.|::           ||    |.|......:.|:|.|
 Frog   657 FVLTSTTILVLMSTVVTYTHYRGFCF----ATYKRILGLIIGNEKK 698

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
rdo	NP_001286024.1	LRR	69..>446	CDD:443914	102/389 (26%)
		leucine-rich repeat	84..107	CDD:275380	6/22 (27%)
		leucine-rich repeat	108..131	CDD:275380	8/22 (36%)
		leucine-rich repeat	132..155	CDD:275380	7/22 (32%)
		leucine-rich repeat	156..179	CDD:275380	6/22 (27%)
		leucine-rich repeat	180..203	CDD:275380	8/22 (36%)
		leucine-rich repeat	204..251	CDD:275380	13/51 (25%)
		leucine-rich repeat	252..275	CDD:275380	9/24 (38%)
		leucine-rich repeat	276..299	CDD:275380	9/27 (33%)
		leucine-rich repeat	300..323	CDD:275380	8/23 (35%)
		leucine-rich repeat	388..411	CDD:275380	0/22 (0%)
LOC100496647	XP_002940742.3	LRR	<60..>196	CDD:443914
		leucine-rich repeat	60..81	CDD:275380
		leucine-rich repeat	82..107	CDD:275380
		leucine-rich repeat	108..131	CDD:275380
		leucine-rich repeat	132..157	CDD:275380
		leucine-rich repeat	158..182	CDD:275380
		leucine-rich repeat	183..260	CDD:275380	4/11 (36%)
		leucine-rich repeat	261..300	CDD:275380	8/41 (20%)
		LRR	<299..612	CDD:443914	104/394 (26%)
		leucine-rich repeat	301..324	CDD:275380	6/22 (27%)
		leucine-rich repeat	325..348	CDD:275380	8/22 (36%)
		leucine-rich repeat	349..372	CDD:275380	7/22 (32%)
		leucine-rich repeat	373..396	CDD:275380	6/22 (27%)
		leucine-rich repeat	419..446	CDD:275380	5/26 (19%)
		leucine-rich repeat	464..488	CDD:275380	9/24 (38%)
		leucine-rich repeat	489..541	CDD:275380	17/52 (33%)
		leucine-rich repeat	542..563	CDD:275380	12/86 (14%)
		leucine-rich repeat	564..582	CDD:275380	8/17 (47%)
		TIR	706..841	CDD:214587