DRSC/TRiP Functional Genomics Resources

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Protein Alignment rdo and igfals

DIOPT Version :10

Sequence 1:NP_001286024.1 Gene:rdo / 35077 FlyBaseID:FBgn0243486 Length:757 Species:Drosophila melanogaster
Sequence 2:XP_002940278.2 Gene:igfals / 100489984 XenbaseID:XB-GENE-1008441 Length:601 Species:Xenopus tropicalis


Alignment Length:589 Identity:159/589 - (26%)
Similarity:230/589 - (39%) Gaps:149/589 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 CPTECQCSMDDLDRYQAICTKGGLNSLLSPNELDVDVKVIIIRGPRNSITIGPALRQFMKLEILR 88
            ||..|.||.|..:.|...|:...|..:..|..                    ||.|.      |.
 Frog    35 CPPPCVCSYDYSEEYSVFCSSRNLTRVPEPPP--------------------PAARS------LW 73

  Fly    89 ITDSNLPAIGAESFWGLKYLRILDLSKNNITNITENNFRGQDNLLELDLSKNKVLRMASSTFRHL 153
            :..:||..:.|.:|..|.:|..|:|..:.:.::.:....|...|..|.|.:|.:..:|.|||.|.
 Frog    74 LDGNNLTTVQAGAFRNLSHLDFLNLQSSQVASLEQQALHGLKALAHLHLERNMIKSLAPSTFTHT 138

  Fly   154 TDLRRLNLADNSIVELVQRNFFMLSRLKYLDLSGNPLQDLQPDVFRDVPELKVLKCRNCQLKKIN 218
            .:|..|.|.:|.:.::....|..||.|.||:|..|.|..|...||.|:..|:.|.....:|..:.
 Frog   139 QNLVSLTLNNNFLTKIEDGLFSGLSNLWYLNLGWNLLVVLPDMVFHDLLNLRELVLAGNRLVYLQ 203

  Fly   219 PQMYNLLPLLSELDLGRNEFKFLDKDEFRDVKRLTKVLLDGNQLSVVVDQLFRMQKSLNHLDLSY 283
            |.::..|..|.||||..|..|.:..:.|...::..|:.|:.|.:|.|..:.|...|:|..||||:
 Frog   204 PSLFLSLGELKELDLSGNSLKGIKANVFTRQQKTHKLYLNHNHISTVAPRAFSGMKNLRWLDLSH 268

  Fly   284 NRLAKVPNDSFLQLTNLTFLDLSYNKLVRLEP--------------------------------- 315
            |||..:..|:|..|.:|..|.||.|.|..|.|                                 
 Frog   269 NRLTALYEDTFFGLPSLNVLRLSNNSLTSLRPRIFKDLQFLVELNLGQNKIKILLERTFEGLAQL 333

  Fly   316 ----------QSIR-----SLSNLLTLNISGNVLMDLRE-------------MRET----FEPLI 348
                      |.||     .|.|:..:|:|||.|..|.|             |..:    .:|.:
 Frog   334 ELLSLNHNNVQEIRPGSFLGLLNVAVINLSGNCLKSLAEHCFKGLGKLHSLHMESSCLSHIKPQM 398

  Fly   349 YYFFLTCSKLFFQ-----------------LIP------QLTHLAIADMGTMPVGLLHPFKQLRY 390
            :....:..:||.|                 |:.      :||||.....    .||    |.|.|
 Frog   399 FAGLSSIRRLFLQNNEIVAIEDHSFTDLHGLLELDLRSNKLTHLTTRSF----TGL----KNLSY 455

  Fly   391 LNISGNSLNNTALEVIDPCRELEFLDLSRNQLHGISEDTVLRIQGIRNVRLDNNPLICDECHMGK 455
            |.:|.|.:...:.||..|.::|::||||.|||..::||..|.:..:|.:.|.||.|        |
 Frog   456 LLLSSNQILTISPEVFSPVQQLQWLDLSDNQLKALTEDIFLPLSSLRYLSLKNNCL--------K 512

  Fly   456 LINV--------VRQLQW----KWDTYPICFLPKSLRGAEINNLDINGLHTCLTFITDEEQNAAS 508
            .|:|        ::|| |    :||..  |.| |.||...:.|..|.. |  |.....|..:.||
 Frog   513 TISVNFLIPPPTMQQL-WLNGNQWDCG--CAL-KGLRDLALRNSTIVP-H--LVQSISEGDDTAS 570

  Fly   509 TSYN 512
            ..||
 Frog   571 PVYN 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rdoNP_001286024.1 LRR 69..>446 CDD:443914 126/464 (27%)
leucine-rich repeat 84..107 CDD:275380 6/22 (27%)
leucine-rich repeat 108..131 CDD:275380 4/22 (18%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
leucine-rich repeat 156..179 CDD:275380 6/22 (27%)
leucine-rich repeat 180..203 CDD:275380 10/22 (45%)
leucine-rich repeat 204..251 CDD:275380 13/46 (28%)
leucine-rich repeat 252..275 CDD:275380 6/22 (27%)
leucine-rich repeat 276..299 CDD:275380 11/22 (50%)
leucine-rich repeat 300..323 CDD:275380 12/70 (17%)
leucine-rich repeat 388..411 CDD:275380 8/22 (36%)
igfalsXP_002940278.2 leucine-rich repeat 69..92 CDD:275380 7/28 (25%)
PLN00113 71..>534 CDD:215061 130/485 (27%)
leucine-rich repeat 93..116 CDD:275380 4/22 (18%)
leucine-rich repeat 117..140 CDD:275380 9/22 (41%)
leucine-rich repeat 141..164 CDD:275380 6/22 (27%)
leucine-rich repeat 165..188 CDD:275380 10/22 (45%)
leucine-rich repeat 189..212 CDD:275380 5/22 (23%)
leucine-rich repeat 213..236 CDD:275380 8/22 (36%)
leucine-rich repeat 237..260 CDD:275380 6/22 (27%)
leucine-rich repeat 261..284 CDD:275380 11/22 (50%)
leucine-rich repeat 285..308 CDD:275380 8/22 (36%)
leucine-rich repeat 309..332 CDD:275380 0/22 (0%)
leucine-rich repeat 333..354 CDD:275380 3/20 (15%)
leucine-rich repeat 357..380 CDD:275380 7/22 (32%)
leucine-rich repeat 381..404 CDD:275380 2/22 (9%)
leucine-rich repeat 405..428 CDD:275380 3/22 (14%)
leucine-rich repeat 429..450 CDD:275380 5/24 (21%)
leucine-rich repeat 453..472 CDD:275380 7/18 (39%)
leucine-rich repeat 477..500 CDD:275380 11/22 (50%)
leucine-rich repeat 525..537 CDD:275378 4/12 (33%)

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