DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Pcdhb9

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_444364.3 Gene:Pcdhb9 / 93880 MGIID:2136744 Length:828 Species:Mus musculus


Alignment Length:764 Identity:177/764 - (23%)
Similarity:304/764 - (39%) Gaps:184/764 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   135 VFDRQTYRTQITEEDD----------------RNLPKRILQVTATDGDVDRPINIVYFLTGQGID 183
            |....|.|..|.||.:                |.|..|..:|.:.|           :.....:|
Mouse    60 VCSEPTIRYSILEETESGSFVAHLAKDLGLGARELAARSARVLSDD-----------YKQRLLLD 113

  Fly   184 PDNPANSKFDINRTTGDIFVLKPLDRDQPNGRP-----QWRFTVFAQDEGGEGLVGYADIQVNLK 243
            |:            |||:.:.:.:||::.....     .::.|:       |..|.|...::.::
Mouse   114 PE------------TGDLLLREKVDREEVCSTVDPCVLHFQVTL-------EKPVQYFQRELLIQ 159

  Fly   244 DINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKN----VIEEET- 303
            ||||:||:||.......:.||...|:......|.|.|   ..:|....|::..|    |:.:.. 
Mouse   160 DINDHAPEFPDRELLLRIPENSQQGTQFSLNLAQDLD---VGSNGLQQYTVSPNPYFHVLTQNNS 221

  Fly   304 -GAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTASIR--VKDLNDMPPQFT 365
             |....|:..:.|        ||||...:.|:.:.|:|||....:|||.:|  :.|:||..|:|.
Mouse   222 KGKKYPELVQDRG--------LDREEQAELSLTLTALDGGSPPRSGTALVRILIMDINDNAPEFV 278

  Fly   366 KDEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRNGD-------- 422
            ...:..:|.|::.   |::|:|||..:|.|..|           ||...:...:..|        
Mouse   279 NSPYEVQVLESSP---PDSPVLTVLARDADAGN-----------FGRVSYGFFQASDEIQQTFSI 329

  Fly   423 --GTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKF 485
              .:|.:::.:.||:|   :...:...|:..|.|.....||         |.:::.|:|||.|:.
Mouse   330 NATSGDMRLKKKLDFE---KIKSYHVEIEAIDGGGLSGKGS---------VTIEVVDVNDNAPEL 382

  Fly   486 DREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYK-------IVRSTNRKRQFAISDRGAVS 543
            ....:..|:.|:.. .||:..|:..|.|.|.:.|:...       |::||.:.....::      
Mouse   383 TISSLTSSVPENAP-ETIISIFRVGDRDSGENGKMVCSIPENLPFILKSTFKNFYTLVT------ 440

  Fly   544 IQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQ-DYKPTLPENVS-GKK 606
             :.|||||::..::|.|:..|.|:|..|...|:.|.|.|:|||.|.|.| .|...:.||.| ...
Mouse   441 -ESPLDRESRAEYNITIMVSDMGTPRLTTWHTIKVQVSDINDNTPAFTQTSYTMFVRENNSPALH 504

  Fly   607 ILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQK 671
            |..::|.|.|.   |:....|:.|.|....|:.....:..:.    :||.  :.:||..|.||.:
Mouse   505 IGTISATDSDS---GSNAHITYSLLPPHDPELALSSLISINA----DNGQ--LFALRALDYEALQ 560

  Fly   672 SYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQGQSQDTP----------- 725
            .:...:...|.|:|.::..:.:.|.:.|.|||     :..||   |..|:...|           
Mouse   561 VFEFHVGATDGGSPPLSSQALVRVVVLDDNDN-----APFVL---YPMQNASAPFTELLPRAAEP 617

  Fly   726 ---IGRVYVNDPDD----WDVPDKKYYWEVQEHQRFKL--DTDTGILTMRAGTRRGRYQLRFKVY 781
               :.:|...|.|.    |              ..|:|  .|:.|:.::.|.....|       .
Mouse   618 GYLVTKVVAVDRDSGQNAW--------------LSFQLLKATEPGLFSVWAHNGEVR-------T 661

  Fly   782 DREHGQEDIPAN-LSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWNPV 829
            .|...:.|:|.: |.:.|:| ..|. |::.|:.|..:..:.|.:::.|:
Mouse   662 TRLLSERDVPKHRLLLVVKD-NGEP-QRSASVTLQVLLVDGFSQSYLPL 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 24/128 (19%)
Cadherin_repeat 256..359 CDD:206637 27/110 (25%)
Cadherin_repeat 379..481 CDD:206637 23/111 (21%)
Cadherin_repeat 489..586 CDD:206637 28/103 (27%)
Cadherin_repeat 594..703 CDD:206637 26/109 (24%)
Cadherin_repeat 724..801 CDD:206637 16/97 (16%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Pcdhb9NP_444364.3 Cadherin_2 65..147 CDD:285466 18/111 (16%)
Cadherin_repeat 175..273 CDD:206637 28/108 (26%)
Cadherin_repeat 281..378 CDD:206637 25/122 (20%)
Cadherin_repeat 390..482 CDD:206637 28/99 (28%)
Cadherin_repeat 490..592 CDD:206637 26/110 (24%)
Cadherin_repeat 606..699 CDD:206637 21/115 (18%)
Cadherin_C_2 723..805 CDD:293101
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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