DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Pcdh1

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_006526383.1 Gene:Pcdh1 / 75599 MGIID:104692 Length:1238 Species:Mus musculus


Alignment Length:885 Identity:230/885 - (25%)
Similarity:351/885 - (39%) Gaps:187/885 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLTVNAKDHNESTNIRYQITGGN----IGNAF 82
            :|:.:.|.||:.|.|:|..||.|:.||:.:..:|:.|.|.|.::..|.....|...    :....
Mouse   266 LRVTVLDTNDNAPKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQAPEVVRRLL 330

  Fly    83 AVQNTTGVIYVASPLDYE--TRPRYE-LRLEATRNRKNNYTTVVINVRDVNDNPPVFD------- 137
            .:...||:|.|..|:|.|  :..|:. |..:.....|:....||:.|:|:|||.|..:       
Mouse   331 RLDRNTGLITVQGPVDREDLSTLRFSVLAKDRGATPKSARAQVVVTVKDMNDNAPTIEIRGIGLV 395

  Fly   138 -RQTYRTQITEEDDRNLPKRILQVTATDGDVDRPINIVY-----FLTGQGIDPDNPANSKFDINR 196
             .|.....|:|:........::||:..|...:..:..|.     |...|..:..:.:..|:.:..
Mouse   396 THQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSDSKKKYFLQT 460

  Fly   197 TTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNV 261
            ||       |||.::..   .:...:.|.|.|...|.....::|.:.|:|||||.|.|.|.....
Mouse   461 TT-------PLDYEKVK---DYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSITEVAF 515

  Fly   262 TENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDR 326
            .||...|..|..::|.|.|   ..:||:|:||:|    .|.....:|.|.||.|.|:... .|||
Mouse   516 PENNKPGEVVAEVTASDAD---SGSNAELVYSLE----PEPAAQGLFTISPENGEIRVKT-SLDR 572

  Fly   327 ERTPDYSIQVVAMDGG--GLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPE-TPILT 388
            |:...|.::|||.|.|  .|:||.|..:.|.|.||..|:|....:...|.|.    :|. :|:..
Mouse   573 EQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVMEN----MPALSPVGM 633

  Fly   389 VTVQDED--ETNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVN 451
            |||.|.|  |....|..|..::|    .| :::||.||    |:..|.: |..|.|.:.|:::..
Mouse   634 VTVIDGDKGENARVQLSVEQDNG----DF-VIQNGTGT----ILSSLSF-DREQQSTYTFQLKAV 688

  Fly   452 DKGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVS---IYEDTKVGTILEQFKATDAD 513
            |.|  .|..|     ||..|.:.:.|.|||.| |.......|   :...|::|..:.|..|.|.|
Mouse   689 DGG--VPPRS-----AYVGVTINVLDENDNAP-FITAPSNTSHRLLTPQTRLGETVSQVTAEDID 745

  Fly   514 QGGHSKVAYKIVRSTNRKRQFAI-SDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLT 577
            .|.::::.|.|. ..|....|.| |..||:::::.::|.....|.:.:...|.|.|.|..||.:.
Mouse   746 SGINAELTYSIA-GGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKPPRYGTALVH 809

  Fly   578 VIVKDVNDNAPTFAQDYKPTLPENVSGKKILEVAAKDPDDRLRGNGGPFTFRLD-PLASDEIKAG 641
            :.|.                  |.::.:.:||..              ....|| ||   :|...
Mouse   810 LYVN------------------ETLANRTLLETL--------------LVHSLDTPL---DIDIA 839

  Fly   642 FKVEYDRRGDNEN----------GVAIISSLRPF-----DREAQKSY-AIPIEIKDNGAPAMTGT 690
            ...||:|.....|          .||::.:|...     .|||:..| |...|.||..||..:| 
Mouse   840 GDPEYERSKQRGNILFGVVAGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSG- 903

  Fly   691 STLTVTIGDVNDNKMQPGSKSVLVYNYQGQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFK 755
                         |...||||      :|:...:|.....|.|.||..         :|:..:|.
Mouse   904 -------------KAAKGSKS------KGKKSKSPKPVKPVEDEDDTG---------LQKSLKFN 940

  Fly   756 LDTDTGILTMR---------AGTRRGRY------------QLRFKVYDREHG--QEDIPANLSVT 797
            |.:|....:.|         .....||:            |.:.....::|.  |:..|||..|.
Mouse   941 LMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSPLPSIQLQPQSPSASKKHQVVQDLPPANTFVG 1005

  Fly   798 VRDITAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSK 837
            ..|.|:     .||.:.|     |:....||.|   .|||
Mouse  1006 TGDTTS-----TGSEQYS-----DYSYRTNPPK---YPSK 1032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 26/97 (27%)
Cadherin_repeat 140..248 CDD:206637 21/112 (19%)
Cadherin_repeat 256..359 CDD:206637 37/104 (36%)
Cadherin_repeat 379..481 CDD:206637 31/104 (30%)
Cadherin_repeat 489..586 CDD:206637 25/100 (25%)
Cadherin_repeat 594..703 CDD:206637 26/125 (21%)
Cadherin_repeat 724..801 CDD:206637 19/99 (19%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Pcdh1XP_006526383.1 Cadherin_2 59..138 CDD:369785
Cadherin_repeat 172..276 CDD:206637 3/9 (33%)
Cadherin_repeat 284..383 CDD:206637 26/98 (27%)
Cadherin_repeat 402..502 CDD:206637 21/109 (19%)
Cadherin_repeat 512..608 CDD:206637 37/103 (36%)
Cadherin_repeat 617..711 CDD:206637 33/114 (29%)
Cadherin_repeat 730..812 CDD:206637 23/82 (28%)
Protocadherin 815..1029 CDD:369839 59/272 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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