DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Pcdh18

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_006500852.1 Gene:Pcdh18 / 73173 MGIID:1920423 Length:1135 Species:Mus musculus


Alignment Length:1037 Identity:227/1037 - (21%)
Similarity:384/1037 - (37%) Gaps:238/1037 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FWVLTNST-YLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLTVNA--KDHNESTNI 69
            |.|||..| :|....:.:.:.|.||:.|.|.|.:...||.|:|.:.:.:...:|  .|..|::..
Mouse   108 FDVLTLPTEHLQLFHIEVDVLDINDNSPQFSRPVIPIEISESAAVGTRIPLDSAFDPDVGENSLH 172

  Fly    70 RYQITGGNIGNAFAVQNTTGVIY----VASPLDYETRPRYELRLEATR---NRKNNYTTVVINVR 127
            .|.::..:..|......|.|..|    |...||.|.:..|||:|.|:.   .:::..:.:.|::.
Mouse   173 TYSLSANDYFNIEVRTRTDGAKYAELIVVKELDRELKASYELQLTASDMGVPQRSGSSILKISIS 237

  Fly   128 DVNDNPPVFDRQTYRTQITEEDDRNLP--KRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANS 190
            |.|||.|.|::.:|..|:.|    |.|  ..:|.:.|||.|......|||..:.. :.|  ....
Mouse   238 DSNDNSPAFEQPSYTIQLLE----NSPVGTLLLDLNATDPDEGANGRIVYSFSSH-VSP--KIIE 295

  Fly   191 KFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQG 255
            .|.|:...|.:.:.||:|.:...   .:...|.|||.|...:..:..|.:.:.|:|||.|:....
Mouse   296 TFKIDSEKGHLTLFKPVDYEITK---SYEIDVQAQDLGPNSIPAHCKIIIKVVDVNDNKPEISIN 357

  Fly   256 IYFGNVTENGTA--GSSVMTMSA-VDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEP--ETG 315
            :......|....  |..:.|..| |...|.:...|.::|..:.        |...|:::.  |..
Mouse   358 LMSPGKEEVSYVFEGDPIDTFVAIVRVQDKDSGLNGEIICKLH--------GHGHFKLQKTYENN 414

  Fly   316 LIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTAS------IRVKDLNDMPPQFTKDEWVTEVD 374
            .:......||||:..:||:.|:|.|    |||.:.|      :::.|:||.||:|.:..:...:.
Mouse   415 YLILTNATLDREKRSEYSLTVIAED----KGTPSLSSVRHFTVQINDINDNPPRFQRSRYEFVIS 475

  Fly   375 ETNGTYIPETPILTVTVQDED--ETNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYED 437
            |.|.   |...|.|||..|.|  |.....|.::.:...|:.....|......|::..::..|:|:
Mouse   476 ENNS---PGAYITTVTATDPDLGENGHVTYTILESFVLGSSITTYVTIDPSNGAIYALRIFDHEE 537

  Fly   438 PLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYSWVVVKLRDINDNV-----PKFDREHIEVSIYED 497
            ..|   ..|.::..|      |||.|...:.:.||:.:.|.||||     |.......|:||.:.
Mouse   538 VSQ---ITFVVEARD------GGSQKQLSSNTTVVLTIIDENDNVPVVIGPAMHNNTAEISIPKG 593

  Fly   498 TKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAISDRGAVSIQRPLDRET--QDRHHIQI 560
            .:.|..:.:.:..|.|.|.:::.:..|| |.|.:..| |.|..:..|...:..|:  .....:.:
Mouse   594 AESGFHVTRIRVVDRDSGANAEFSCSIV-SGNEENIF-IMDPRSCDIHTNVSMESIPSAEWALSV 656

  Fly   561 LAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVSGKKILEVAA------------- 612
            :..|.|||.......|..:|.|..::..:.|.........:||...|:.:.|             
Mouse   657 IIQDKGSPPLHTKVLLRCMVFDYAESVTSTAMTSVSRASLDVSMIIIISLGAICAVLLVIMVLFA 721

  Fly   613 ----KDPDDRLRGN--GGPFTFRLDP-LASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQ 670
                ::..|....|  ....|::..| ..|.:|         .:||    :.::.::        
Mouse   722 TRCNREKKDTRSYNCRVAESTYQHHPKRPSRQI---------HKGD----ITLVPTI-------- 765

  Fly   671 KSYAIPIEIKDNGAPAMTGT-------------------STLTVTIGDVNDN------KMQPGSK 710
             :..:||......:|:.:.|                   |.:|::...|.:|      ...|..:
Mouse   766 -NGTLPIRSHHRSSPSSSPTLERGQMGSRQSHNSHQSLNSLVTISSNHVPENFSLELTHATPAVE 829

  Fly   711 SV---LVYNYQGQSQDTPI--GRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGILTMRAGTR 770
            .|   |...:|||.|..|.  |..|          .:.|.:.:|:..:|.| .|:|.....||. 
Mouse   830 QVSQLLSMLHQGQYQPRPSFRGNKY----------SRSYRYALQDMDKFSL-KDSGRGDSEAGD- 882

  Fly   771 RGRYQL-RFKVYDREHGQ-----------------------------------------EDIPAN 793
             ..|.| |....||..|:                                         .|..:|
Mouse   883 -SDYDLGRDSPIDRLLGEGFSDLFLTDGRIPAAMRLCTEECRVLGHSDQCWMPPLPSPSSDYRSN 946

  Fly   794 LSVTVRDITAEAVQQ--------------AGSMRLSHIT-------DED--------FVRTWNPV 829
            :.:...:..|:..||              .|..:.|..|       |||        .:...:.|
Mouse   947 MFIPGEEFPAQPQQQHSHQGLDDDSQPAENGEKKKSFSTFGKDSPSDEDSGDSSTSSLLSEMSSV 1011

  Fly   830 KNQVEPSKLERFRNKLAELLYTDRDNVDVFSVQLKEG------SPYPLTDVHFAARSATQQP 885
            ..::.|:.|:.|    :|....||.|    |::.::|      ..||.....:||.:..|.|
Mouse  1012 FQRLLPASLDTF----SECNEGDRSN----SLERRKGPAQGKTGGYPQGVAAWAASTHFQNP 1065

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 24/99 (24%)
Cadherin_repeat 140..248 CDD:206637 28/109 (26%)
Cadherin_repeat 256..359 CDD:206637 25/113 (22%)
Cadherin_repeat 379..481 CDD:206637 25/103 (24%)
Cadherin_repeat 489..586 CDD:206637 23/98 (23%)
Cadherin_repeat 594..703 CDD:206637 19/147 (13%)
Cadherin_repeat 724..801 CDD:206637 19/120 (16%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Pcdh18XP_006500852.1 Cadherin_2 32..111 CDD:369785 1/2 (50%)
Cadherin_repeat 141..242 CDD:206637 24/100 (24%)
Cadherin_repeat 250..350 CDD:206637 28/109 (26%)
Cadherin_repeat 368..461 CDD:206637 25/104 (24%)
Cadherin_repeat 470..572 CDD:206637 27/113 (24%)
Cadherin_repeat 587..678 CDD:206637 22/92 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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