Sequence 1: | NP_001036368.2 | Gene: | CadN2 / 35071 | FlyBaseID: | FBgn0262018 | Length: | 1799 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001102865.1 | Gene: | Pcdhb20 / 680203 | RGDID: | 1594228 | Length: | 799 | Species: | Rattus norvegicus |
Alignment Length: | 758 | Identity: | 186/758 - (24%) |
---|---|---|---|
Similarity: | 304/758 - (40%) | Gaps: | 174/758 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 7 IFWVLTNSTYLVTKFVRIGIADKNDSPPYFDRFLYETEIDE-----NADLQSTVLTVNAKDHNES 66
Fly 67 TNIRYQITGGNIGNAFAVQNTTGVIYVASPLDYE-----TRP---RYELRLEATRNRKNNYTTVV 123
Fly 124 INVRDVNDNPPVFDRQTYRTQITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPA 188
Fly 189 NSKFDIN-----------RTTGD------IFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYA 236
Fly 237 DIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEE 301
Fly 302 ETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTASIRVKDLNDMPPQFTK 366
Fly 367 DEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKIIQ 431
Fly 432 PLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYS-------------WVVVKLRDINDNVP 483
Fly 484 KFDREHIEVSIYEDTK----VGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAI-------S 537
Fly 538 DRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAP-------TFAQDYK 595
Fly 596 PTLPENVS-GKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKA---GFKVEYDRRGDNENGV 656
Fly 657 AIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGD 699 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CadN2 | NP_001036368.2 | Cadherin_repeat | 41..132 | CDD:206637 | 21/103 (20%) |
Cadherin_repeat | 140..248 | CDD:206637 | 25/124 (20%) | ||
Cadherin_repeat | 256..359 | CDD:206637 | 36/102 (35%) | ||
Cadherin_repeat | 379..481 | CDD:206637 | 20/114 (18%) | ||
Cadherin_repeat | 489..586 | CDD:206637 | 30/107 (28%) | ||
Cadherin_repeat | 594..703 | CDD:206637 | 27/110 (25%) | ||
Cadherin_repeat | 724..801 | CDD:206637 | |||
EGF_CA | 977..1010 | CDD:238011 | |||
LamG | 1013..1198 | CDD:238058 | |||
EGF_2 | <1233..1259 | CDD:285248 | |||
Laminin_G_2 | 1293..1428 | CDD:280389 | |||
EGF_CA | 1497..1535 | CDD:238011 | |||
Cadherin_C | 1583..1719 | CDD:279398 | |||
Pcdhb20 | NP_001102865.1 | Cadherin_2 | 31..112 | CDD:285466 | 18/101 (18%) |
Cadherin_repeat | 137..238 | CDD:206637 | 25/124 (20%) | ||
Cadherin_repeat | 247..343 | CDD:206637 | 37/102 (36%) | ||
Cadherin_repeat | 355..447 | CDD:206637 | 21/117 (18%) | ||
Cadherin_repeat | 455..557 | CDD:206637 | 30/107 (28%) | ||
Cadherin_repeat | 571..664 | CDD:206637 | 26/109 (24%) | ||
Cadherin_C_2 | 687..769 | CDD:293101 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
0 | 0.000 |