DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and CDH26

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_011527271.1 Gene:CDH26 / 60437 HGNCID:15902 Length:895 Species:Homo sapiens


Alignment Length:892 Identity:216/892 - (24%)
Similarity:348/892 - (39%) Gaps:243/892 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 QITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDI-NRTTGDIFVLKPL 207
            ::.|||....||.|.::.   .::...::::|.::|.|:| :.|....|.: :...|.|:|.:|:
Human    64 ELEEEDPGPFPKLIGELF---NNMSYNMSLMYLISGPGVD-EYPEIGLFSLEDHENGRIYVHRPV 124

  Fly   208 DRDQ-PNGRPQWRFTV-FAQDEGGEGLVGYADIQVNLK--DINDNAPQFPQGIYFGNVTENGTAG 268
            ||:. |:      ||| |...|...|.:....:..|::  |:||:|||||:..:...|.||.:||
Human   125 DREMTPS------FTVYFDVVERSTGKIVDTSLIFNIRISDVNDHAPQFPEKEFNITVQENQSAG 183

  Fly   269 SSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYS 333
            ..:..|.|||.|:.|...:..|.:.|.:..:.:|:|   |.::..:|.|:.: .|||.|..|.::
Human   184 QPIFQMLAVDLDEENTPNSQVLYFLISQTPLLKESG---FRVDRLSGEIRLS-GCLDYETAPQFT 244

  Fly   334 IQVVAMDGG--GLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDEDE 396
            :.:.|.|.|  .|..|.|..:.|::.|:..|.||::.:..::.|...:    ..:|.:.|||.|.
Human   245 LLIRARDCGEPSLSSTTTVHVDVQEGNNHRPAFTQENYKVQIPEGRAS----QGVLRLLVQDRDS 305

  Fly   397 TNTFQYKVVPNSGFGADKFAMVR-NGDG-----------TGSLKIIQPLDYED-PLQSSGF---- 444
            ..|..::.         ||.::. |.:|           .|.|.:|:|||||. |.||...    
Human   306 PFTSAWRA---------KFNILHGNEEGHFDISTDPETNEGILNVIKPLDYETRPAQSLIIVVEN 361

  Fly   445 RFRIQVNDKGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKA 509
            ..|:...::|...|   .:...|.:.|.|::.|.|| .|.|..:...|:..|..:.||:|..|.|
Human   362 EERLVFCERGKLQP---PRKAAASATVSVQVTDAND-PPAFHPQSFIVNKEEGARPGTLLGTFNA 422

  Fly   510 TDADQGGHSKVAYKIVR------STNRKRQFAISDRGAVSIQRPLDRETQDRHH----IQILAID 564
            .|.|    |::.|::|.      |.::       :.|.|....|:|||:...::    |.|.|:|
Human   423 MDPD----SQIRYELVHDPANWVSVDK-------NSGVVITVEPIDRESPHVNNSFYVIIIHAVD 476

  Fly   565 DGSPARTATATLTVIVKDVNDNAPTF--AQDYKPTLPENVSGKKILEVAAKDPDDRLRGNGGPFT 627
            ||.|.:|||.||.:.:.|:|||.||.  ...|.......|  .:.|.:.|:|||  |.....|||
Human   477 DGFPPQTATGTLMLFLSDINDNVPTLRPRSRYMEVCESAV--HEPLHIEAEDPD--LEPFSDPFT 537

  Fly   628 FRLDPL---ASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQKSYAIPIEIKDNG------ 683
            |.||..   |.|..|.         |.|......:.:||...|   .:|.:|:.|.|..      
Human   538 FELDNTWGNAEDTWKL---------GRNWGQSVELLTLRSLPR---GNYLVPLFIGDKQGLSQKQ 590

  Fly   684 ------APAMTGTSTLTVTIGDV-----------------------------------------N 701
                  .|..:|.:.:.:...:|                                         |
Human   591 TVHVRICPCASGLTCVELADAEVGLHVGALFPVCAAFVALAVALLFLLRCYFVLEPKRHGCSVSN 655

  Fly   702 DNKMQPGSKSVLVYNYQ--GQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGILT 764
            |.    |.:::::||.:  |.|..|                     |...|.||..|    .|.|
Human   656 DE----GHQTLVMYNAESKGTSAQT---------------------WSDVEGQRPAL----LICT 691

  Fly   765 MRAGTRRGRYQLRFKVYDREHGQEDIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWNP- 828
            ..||..:|...|           |::|.:           |..|:...|.: :....:.:.:.| 
Human   692 AAAGPTQGVKDL-----------EEVPPS-----------AASQSAQARCA-LGSWGYGKPFEPR 733

  Fly   829 -VKN----------QVEPSKLERFRNKLAELLYTDRDNVDVFSVQ-------------------- 862
             |||          .:....|.....::||.|...::. :.||:.                    
Human   734 SVKNIHSTPAYPDATMHRQLLAPVEGRMAETLNQSKER-NRFSLSRGCIIPQGRATAGRGLPQDI 797

  Fly   863 LKEGSPYPLTDVHFAARSA-TQQPYFKAVRLNGVVQMHREEIEKDVG 908
            .||..|..||........| .:.|.||.     ||..|:|:.|...|
Human   798 YKEMMPRRLTQTGKRKHGALARTPSFKK-----VVYDHKEDEENKAG 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 28/108 (26%)
Cadherin_repeat 256..359 CDD:206637 30/104 (29%)
Cadherin_repeat 379..481 CDD:206637 29/118 (25%)
Cadherin_repeat 489..586 CDD:206637 33/106 (31%)
Cadherin_repeat 594..703 CDD:206637 30/164 (18%)
Cadherin_repeat 724..801 CDD:206637 14/76 (18%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
CDH26XP_011527271.1 Cadherin_repeat <87..163 CDD:206637 22/82 (27%)
Cadherin_repeat 171..273 CDD:206637 31/105 (30%)
Cadherin_repeat 282..394 CDD:206637 29/127 (23%)
Cadherin_repeat 409..498 CDD:206637 32/99 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.