DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh15

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_997771.2 Gene:cdh15 / 565617 ZFINID:ZDB-GENE-030131-780 Length:792 Species:Danio rerio


Alignment Length:860 Identity:203/860 - (23%)
Similarity:341/860 - (39%) Gaps:215/860 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 TVVINV-----RDVNDNPPVFDRQTYRTQ--------ITEEDDRNLPKRILQVTAT---DGDVDR 169
            |:|..|     :..:.||.|.:...:|.:        ...|:.::||:.::|:.:.   .|:|  
Zfish    12 TIVCQVSSSRLKQSDANPAVLNPWRHRVKRDWIIPPIRVLENSKHLPEDLVQIKSDKIFTGEV-- 74

  Fly   170 PINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVG 234
                :|.|.|.|:|.|  ....|:|:..||.|...:||||::   ...::...||....||.|..
Zfish    75 ----IYMLEGPGVDQD--PKGLFEIDEKTGWIKSKEPLDREK---HKSFKLKAFALSPSGERLES 130

  Fly   235 YADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVI 299
            ...|::.:.|.|||.|:|.|..:.|.:.|....|:|||.::|||:|||: :.||.|.|||    |
Zfish   131 PTTIEIYVLDQNDNRPEFTQKEFIGTIPEFSVPGTSVMQVTAVDFDDPS-TDNAALSYSI----I 190

  Fly   300 EEETGAP------IFEIEPETGLIKTAVCCLDRERTPDY--SIQVVAMDGGGLKGTGTASIRVKD 356
            .:|...|      :|.|..:||:|......|||:....:  ::||..|.|.||..:..|.|.:.|
Zfish   191 GQECDPPHGINKTMFGINNKTGVIYIRDVGLDRDVVQSFRLTLQVADMSGMGLTSSSRAIIHISD 255

  Fly   357 LNDMPPQF---------TKDEWVTEVDETNGTYIPETPILTVTVQDEDETN----TFQYKVVPNS 408
            :|:..|:|         .:::.:.||...|.|             |:|:..    ..:|.:|..|
Zfish   256 INNHAPKFQPTTYNMYAMENKLIAEVGRVNAT-------------DKDQRGGDNWRIKYTIVNPS 307

  Fly   409 GFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYHVAYSWVVV 473
            |..|.:...|.|   .|.:.:::.||||       ::...::..|.::.......|...:| ..|
Zfish   308 GHFAIRTDPVSN---QGIISVVKSLDYE-------YQAEYKLIVKAENEVKLKSPYEQIHS-ATV 361

  Fly   474 KLRDINDN-VPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR----------S 527
            .:|.:|:| .|.|.:..|:|::.|....||||....|.|.|   |:|:.::|::          |
Zfish   362 TVRVMNENEAPIFYKNPIKVTVPESVVPGTILVSDIAHDPD---HAKLRFEIIQDPDEWLAIDHS 423

  Fly   528 TNR---KRQFAISDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPT 589
            |.:   |:.|        .|:.|..|  .:.:...:...|..:...:|||||.|.:.:.||..|.
Zfish   424 TGQIMAKKNF--------KIRSPFVR--NNIYSAVVKVTDQDADGISATATLEVNLWETNDYPPL 478

  Fly   590 FAQDYKPTLPENVSGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNEN 654
            ..........:....|..|.::|.|.|  :.....||||.   :|...:.|.:.:    ...||.
Zfish   479 LIPQSGTVCSDRDPDKLGLLLSALDED--MSPQADPFTFN---IADQNMAANWTI----ITLNET 534

  Fly   655 GVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTI------GDVND-NKMQPGSK-- 710
            . |::..|...:|   ..::||:.:.|:|:|::..::.:.||:      ||... .....|||  
Zfish   535 H-AVLQPLVDIER---GEFSIPVVVSDSGSPSLYSSALVNVTVCPCDSFGDCKSITAAIFGSKIG 595

  Fly   711 ----------------------SVLVYNYQGQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQ---- 749
                                  :|.|.:...|:.... |.:.|...|| |:.|..::::.|    
Zfish   596 ISFIALMIIIGCIALLLVLLLLTVAVRSCTSQNIRKG-GGLLVGGSDD-DIRDNVFHYDEQGGGE 658

  Fly   750 -EHQRFKLD----------TDTGILTMRAGTRRGRYQLR--------FKVYDRE----------- 784
             :.:.|.:|          ..........|..||:..||        ...|.|:           
Zfish   659 EDEEAFNIDFLRSPSDMLPAPASFFPQDCGLPRGKQPLRKDAPHYLPSPTYPRKPPGDPTDIEDF 723

  Fly   785 --------HGQEDIPANLSVTVRDITAEAVQQAGSMRLSHIT--------DEDFVRTWNPVKNQV 833
                    ....::|...:..:.|...:. ..|||  ||.|.        |.|::..|.|     
Zfish   724 INVGLDAADNDPNVPPYDTALIYDYEGDG-SVAGS--LSSIASTGSDGDQDYDYLNDWGP----- 780

  Fly   834 EPSKLERFRNKLAEL 848
                  ||: |||.:
Zfish   781 ------RFK-KLANM 788

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 3/15 (20%)
Cadherin_repeat 140..248 CDD:206637 30/118 (25%)
Cadherin_repeat 256..359 CDD:206637 38/110 (35%)
Cadherin_repeat 379..481 CDD:206637 21/105 (20%)
Cadherin_repeat 489..586 CDD:206637 28/109 (26%)
Cadherin_repeat 594..703 CDD:206637 25/115 (22%)
Cadherin_repeat 724..801 CDD:206637 17/118 (14%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh15NP_997771.2 E_set 45..144 CDD:298831 29/109 (27%)
Cadherin_repeat 152..259 CDD:206637 39/111 (35%)
Cadherin_repeat 267..370 CDD:206637 24/126 (19%)
Cadherin_repeat 378..474 CDD:206637 27/108 (25%)
E_set 482..574 CDD:298831 23/104 (22%)
Cadherin_C 639..790 CDD:279398 31/166 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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