DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and PCDHGC5

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_061752.1 Gene:PCDHGC5 / 56097 HGNCID:8718 Length:944 Species:Homo sapiens


Alignment Length:729 Identity:178/729 - (24%)
Similarity:298/729 - (40%) Gaps:130/729 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLTVNAKDHNESTNIRYQITGGNIG 79
            |.|:::.:::|   ..::..||           :..|.|..|.||.|...||      :.|.:..
Human    57 TDLLSRRLQLG---SEENGRYF-----------SLSLMSGALAVNQKIDRES------LCGASTS 101

  Fly    80 NAFAVQNTTGVIYVASPLDYETRPRYELRLEATRNRKNNYTTVVINVRDVNDNPPVFDRQTYRTQ 144
            ....||..|                 |..||..|        |.:.:.|:|||.|.|.......:
Human   102 CLLPVQVVT-----------------EHPLELIR--------VEVEILDLNDNSPSFATPEREMR 141

  Fly   145 ITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTT-------GDIF 202
            |:|.....  .|....:|.|.||.  .|.|.|.|   :.|    ||.|.:|..|       .::.
Human   142 ISESAASG--ARFPLDSAQDPDVG--TNTVSFYT---LSP----NSHFSLNVKTLKDGKPFPELV 195

  Fly   203 VLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTA 267
            :.:.|||:   .:.:.:..:.|.|.|.....|...|.|.:.|||||||.|...:....:.||...
Human   196 LEQQLDRE---AQARHQLVLTAVDGGTPARSGTTLISVIVLDINDNAPTFQSSVLRVGIPENAPI 257

  Fly   268 GSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDY 332
            |:.::.::|.   ||:|.||.:|.||...:.  .|....:|.::|.:|.|. .:..:|.|.:..|
Human   258 GTLLLRLNAT---DPDEGTNGQLDYSFGDHT--SEAVRNLFGLDPSSGAIH-VLGPIDFEESRFY 316

  Fly   333 SIQVVAMDGG--GLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTV----TV 391
            .|...|.|.|  .::|.....:.|.|:||..|:.........|.|:       ||:.||    .|
Human   317 EIHARARDQGQPAMEGHCVIQVDVGDVNDNAPEVLLASLANPVLES-------TPVGTVVGLFNV 374

  Fly   392 QDED--ETNTFQYKVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKG 454
            :|.|  ........:.|:..|      .::..:...||...||||.|   .:|.:...:..:|  
Human   375 RDRDSGRNGEVSLDISPDLPF------QIKPSENHYSLLTSQPLDRE---ATSHYIIELLASD-- 428

  Fly   455 DDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSK 519
                .||...| .:..:.:.:.|:|||.|:|:::.....|.|:...|::|....|:|.|.|.:::
Human   429 ----AGSPSLH-KHLTIRLNISDVNDNAPRFNQQLYTAYILENRPPGSLLCTVAASDPDTGDNAR 488

  Fly   520 VAYKIVRSTNRKRQ-----FAISDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVI 579
            :.|.||.:..:...     :...:.|.:..||..|.|......|.:...|.|||...|..:|.|.
Human   489 LTYSIVGNQVQGAPASSFVYVNPEDGRIFAQRTFDYELLQMLQIVVGVRDSGSPPLHANTSLHVF 553

  Fly   580 VKDVNDNAPTFAQ---DYKPTLPENV-----SGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASD 636
            |.|.|||||....   |::.:.|:.:     .|..:.:|.|.|.|   .|:....::.|.|.:: 
Human   554 VLDENDNAPAVLHPRPDWEHSAPQRLPRSAPPGSLVTKVTAVDAD---AGHNAWLSYSLLPQST- 614

  Fly   637 EIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVN 701
              ..|..:.....|:.....|::..    |.:.|:   :.:.::|||.|:::.|:|:.:.:.|.:
Human   615 --APGLFLVSTHTGEVRTARALLED----DSDTQQ---VVVLVRDNGDPSLSSTATVLLVLEDED 670

  Fly   702 DNKMQPGSKSVLVY 715
            ..:| |.|...|::
Human   671 PEEM-PKSSDFLIH 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 19/90 (21%)
Cadherin_repeat 140..248 CDD:206637 29/114 (25%)
Cadherin_repeat 256..359 CDD:206637 27/104 (26%)
Cadherin_repeat 379..481 CDD:206637 23/107 (21%)
Cadherin_repeat 489..586 CDD:206637 27/101 (27%)
Cadherin_repeat 594..703 CDD:206637 21/113 (19%)
Cadherin_repeat 724..801 CDD:206637
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
PCDHGC5NP_061752.1 Cadherin_2 30..111 CDD:285466 17/90 (19%)
Cadherin_repeat 139..238 CDD:206637 29/112 (26%)
Cadherin_repeat 246..346 CDD:206637 28/105 (27%)
Cadherin_repeat 359..450 CDD:206637 25/113 (22%)
Cadherin_repeat 459..560 CDD:206637 27/100 (27%)
Cadherin_repeat 578..670 CDD:206637 20/104 (19%)
Cadherin_C_2 689..791 CDD:293101
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 722..747
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 812..853
Cadherin_tail 821..>917 CDD:292596
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 914..944
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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