DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and pcdh1g18

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001019288.2 Gene:pcdh1g18 / 554005 ZFINID:ZDB-GENE-050609-13 Length:934 Species:Danio rerio


Alignment Length:849 Identity:207/849 - (24%)
Similarity:339/849 - (39%) Gaps:207/849 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 PKRIL----QVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNG 214
            |||::    :|..||..       .|.    |:|.:|            |.:.:...:||::..|
Zfish    57 PKRLVSGKARVFTTDSS-------EYI----GLDKEN------------GHLVIKNKIDREELCG 98

  Fly   215 RPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDY 279
            ........|  |...|..:....:.|:::|||||:|.|.:......::|....|:.....|||  
Zfish    99 EISACSVSF--DVILEN
PMELYRVTVDIQDINDNSPAFLKSKIEQEISELVLIGARFPLESAV-- 159

  Fly   280 DDPNESTNAKLIYSIEK------NVIEEETGAPIFEI---EPETGLIKTAVCCLDRERTPDYSIQ 335
             ||:...||...|:::.      ||...|.|:...||   .|           ||||:...:|:.
Zfish   160 -DPDVGVNALQKYTLQPTDHFKLNVQNAEDGSKNVEIVLHSP-----------LDREKKNHHSLI 212

  Fly   336 VVAMDGGGLKGTGTASIR--VKDLNDMPPQFTKDEWVTEVDETNGTYIPE-TPILTVTVQDEDE- 396
            :.|.|||..:.:.|..|.  :.|:||..|.|::..:.|.:.|.    .|: |.::.|:..|.|| 
Zfish   213 LTAFDGGKPQRSATLHINIIILDVNDN
APVFSQSSYKTSIVEN----APKSTVVIRVSATDADES 273

  Fly   397 TNTFQY---KVVP--NSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD 456
            ::..||   ...|  .:.|..|.        .:|.:|:...:|||...|   |:.:::..|.|  
Zfish   274 SHGIQYYFEHATPTVKALFSIDA--------DSGDVKVTGQIDYEKHKQ---FKIKVKAKDHG-- 325

  Fly   457 GPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVA 521
              |.:|.     |.:::.:.|:|||.||........::.||...||::......|.|.|.:||::
Zfish   326 --GLTDS-----SEIIIDVIDVNDN
KPKITIMSFSSAVSEDAAPGTVIAMINVQDLDSGDNSKIS 383

  Fly   522 --------YKIVRS-TNRKRQFAISDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLT 577
                    :||:.| ||.......|:         ||||....::|.|.|:|.|:|..:....|.
Zfish   384 CSIDLNSPFKIISSLTNYYNLVTDSE---------LDREQTAEYNITITAVDGGNPPLSVKEILN 439

  Fly   578 VIVKDVNDNAPTFAQD-YKPTLPE-NVSGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKA 640
            :.:.||||:||.|.|: |...:.| |.....||.|.|:|.|      .||           ..|.
Zfish   440 LKISDVNDH
APQFVQESYNAFIAENNPPSTTILTVKAEDMD------WGP-----------NAKV 487

  Fly   641 G-FKVEYDRRG---------DNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTV 695
            . |.::.|..|         ::|:||  :.:.:.||.|..||:.:.::.:|.|:|.::...||.:
Zfish   488 SYFLIDADLNGAPLASYISINSESGV--VYAEKSFDYEQLKSFKMQVKAQDGGSPPLSSNVTLNI 550

  Fly   696 TIGDVNDNKMQPGSKSVLVYNYQGQSQDTPIGRVYVNDPD---------DWDVPDKKYYW----- 746
            .|.|.|||..|     ||   |..|:..:.:..:.....|         ..||...:..|     
Zfish   551 IIQDQNDN
APQ-----VL---YPVQTGASVVAEIVPRAADVGYLVTKVVAVDVDSGQNAWLSYKL 607

  Fly   747 -EVQEHQRFKLDTDTG-ILTMRAGTRRGRYQLRFKVYDREHGQEDIPANLSVTVRDITAEAVQQA 809
             :..:...|::....| |.|:|..|.:...:.:..|...::||....|.:|:.|      ||..:
Zfish   608 QKAADRALFEVGLQNGEIRTVRQVTDKDAVKQKLTVVVEDNGQPSRSAVVSINV------AVADS 666

  Fly   810 GSMRLSHITDEDFVRTWNPVKN-------------------QVEPSKLERFR-NKL-----AEL- 848
            ....||..||....:.:|....                   .:...|:.|:| |||     |.| 
Zfish   667 FPEVLSEFTDFTHEKQYNDNLTFYLVLALAVVSLLFIVSIISIISVKIYRWRQNKLFYKSGANLP 731

  Fly   849 -------LYTDRDNVDVFSVQLKEGSPYPLTDVHFAARSATQQPYFKAVRLN----GVVQMHREE 902
                   :|.|.....|::.::...:...::||.|.      :||.:...::    |.||..|:|
Zfish   732 VIPYYPPVYADGTLQHVYNYEMCGTTDSRMSDVKFV------RPYSQNTLVSQSRVGTVQRERKE 790

  Fly   903 IEKD 906
            .|.|
Zfish   791 QEVD 794

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 21/97 (22%)
Cadherin_repeat 256..359 CDD:206637 29/113 (26%)
Cadherin_repeat 379..481 CDD:206637 25/108 (23%)
Cadherin_repeat 489..586 CDD:206637 29/105 (28%)
Cadherin_repeat 594..703 CDD:206637 31/119 (26%)
Cadherin_repeat 724..801 CDD:206637 16/92 (17%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
pcdh1g18NP_001019288.2 Cadherin_2 31..113 CDD:311943 16/80 (20%)
Cadherin_repeat 142..239 CDD:206637 30/110 (27%)
Cadherin_repeat 247..343 CDD:206637 27/119 (23%)
Cadherin_repeat 356..448 CDD:206637 29/100 (29%)
Cadherin_repeat 456..558 CDD:206637 31/120 (26%)
Cadherin_repeat 577..665 CDD:206637 18/93 (19%)
Cadherin_C_2 686..766 CDD:318652 13/79 (16%)
Cadherin_tail 801..920 CDD:318236
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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