DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and pcdh2ab11

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001009590.2 Gene:pcdh2ab11 / 493599 ZFINID:ZDB-GENE-041118-10 Length:940 Species:Danio rerio


Alignment Length:1163 Identity:251/1163 - (21%)
Similarity:406/1163 - (34%) Gaps:370/1163 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 RFLYETEIDENADLQSTVLTVNAKDHNESTNIR------YQITGGNIGNAFAVQNTTGVIYVASP 96
            :|:|  .:.|.|:..:||..: .||.|  .||:      :.|..|.....|.|...||:::|...
Zfish    28 QFVY--TVSEEANPGTTVGNL-VKDFN--LNIQDLEARGFHIVRGPNERYFDVNKKTGILHVKER 87

  Fly    97 LD----YETRPRYELRLEATRNRKNNYTTVVINVRDVNDNPPVFDRQTYRTQITEEDDRNLP--- 154
            :|    .|...:..|.|||..:...|.....:||.|:|||.|.|     ||.:|..:...|.   
Zfish    88 IDREEICEQNIKCSLPLEAMISSPLNVFRFEVNVVDINDNAPAF-----RTSVTHLNISELTFPG 147

  Fly   155 KRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDIN-------RTTGDIFVLKPLDRDQP 212
            :|.....|.|.||.......|.|:         .|..|.::       ..:.::.:.|.|||:: 
Zfish   148 ERFPLQGAFDADVGSNSLKSYKLS---------QNEHFSLDVQGGGDQSVSAELVLQKALDREK- 202

  Fly   213 NGRPQWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAV 277
              :...:.|:.|.|.|.....|..:|.||:.|||||.|.|.:.:|...||||...|:.|:|:.||
Zfish   203 --QAVIQLTLTAVDGGKPPKSGSIEIIVNVLDINDNTPVFSKSLYKSKVTENAARGTHVITVKAV 265

  Fly   278 DYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGG 342
            |.|   |..|.::||||                                                
Zfish   266 DLD---EGVNGEIIYSI------------------------------------------------ 279

  Fly   343 GLKGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPN 407
                                                                         :.||
Zfish   280 -------------------------------------------------------------INPN 283

  Fly   408 SGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDKYH--VAYSW 470
            :....|.|::   ...||.:.:.:.:|:|   |.:....|||..|||         |:  .|:..
Zfish   284 NDKNVDAFSI---NSVTGEITVQKDVDFE---QRNAIELRIQAKDKG---------YNPKAAHCK 333

  Fly   471 VVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFA 535
            |:|::.|:|||:|......:..::.||..:||::.....||.|.|.:.:|...|..|...|.|.:
Zfish   334 VLVEVVDVNDNIPVISVTSLVSTVKEDAPIGTMVGMITVTDNDAGKNGQVTLNIEGSVPFKVQNS 398

  Fly   536 ISDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTL-- 598
            ..:...:.:..|||||....:::.|.|.|:|||..::|:.:.|.|.|||||||.|.:   |.:  
Zfish   399 YKNYYTLVVNGPLDRERASEYNVTISAADEGSPPLSSTSVIAVHVSDVNDNAPRFPE---PVINV 460

  Fly   599 --PENVS-GKKILEVAAKDPDDRLRGNGGPFTFR-LDPLASDEIKAGFKVEYDRRGDNENGVAII 659
              .||.. |..:..|:|.|||   .|:....|:. |:...|..:.:...:..| .||       :
Zfish   461 YVKENSQIGAVLHTVSAVDPD---VGDNARITYSLLESSKSGPVTSMININSD-TGD-------L 514

  Fly   660 SSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLV-YNYQG--QS 721
            .||:.|:.|..|::...::..|:|.|.::...|:.|.:.|.|||     |.::|. |:..|  .:
Zfish   515 HSLQSFNYEEIKTFEFKVQATDSGVPPLSSNVTVNVFVLDENDN-----SPAILAPYSELGSVNT 574

  Fly   722 QDTP--------IGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGILTMRAGTRRGRYQLRF 778
            ::.|        :.::...|      .|..|...:..|    :....|....|.||..|..:.:.
Zfish   575 ENIPYSAEAGYFVAKIRAVD------ADSGYNALLSYH----ISEPKGNNLFRIGTSSGEIRTKR 629

  Fly   779 KVYDR------------EHGQEDIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFVRTWNPVKN 831
            ::.|.            ::|:..:.|.:|     |.|..|:..|.::             .|.::
Zfish   630 RMSDNDLKTHPLVILVCDNGEPSLSATVS-----IDAVVVESGGDVK-------------TPFRH 676

  Fly   832 QVEPSKLERFRNKLAELLYTDRDNVDVFSVQL----------------KEGSPYPLT--DVHFAA 878
              .|.|.|.|.:....||........:|.:.|                :..:|...|  |..::.
Zfish   677 --APVKEESFSDLNLYLLIAIVSVSVIFLLSLISLIAVKCHRTDSSLGRYSAPIITTHPDGSWSY 739

  Fly   879 RSATQQPYFKAVRLNGVVQMHREEIEKDVGL--------NITMVNINECLHEGKGKCGSNSCTSK 935
            ..:||| |        .|....:.::.||.:        :..:::||          |.::.|..
Zfish   740 SKSTQQ-Y--------DVCFSSDTLKSDVVVFPAPFPPADAELISIN----------GGDTFTRT 785

  Fly   936 VELGKKP----------YTVSVNRTALVGVRLDISAQCVCRARNFTHQDHNCRTHLCYNGGRCVE 990
            ..|..|.          |:.|:.......||::.|:                    ...|.:.|.
Zfish   786 QTLPNKEKPKVPSSDWRYSASLRAGMQSSVRMEESS--------------------VMQGAQGVL 830

  Fly   991 TRNGPKCVACPVGYNGPRCQQSTRSFRGNGWAW-YPPLQLCQESHLSLEFITRVADGLILYNGPI 1054
            .:|.|...:.|....|............|.|.: |.|                         ||.
Zfish   831 VQNWPTVSSAPDNEGGEVSPPVGAGVDSNSWHFRYGP-------------------------GPG 870

  Fly  1055 VPP--KPEETVISDFIALELEQGYPRLL--------------IDFGSGTLELRVKTKK 1096
            .||  ||.|.....||.    .|.|.::              |.||......::|.||
Zfish   871 GPPHLKPGEVPPEAFII----PGSPAIISIRQGQDGDDKSDFITFGKKEEAKKLKKKK 924

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 28/100 (28%)
Cadherin_repeat 140..248 CDD:206637 28/117 (24%)
Cadherin_repeat 256..359 CDD:206637 18/102 (18%)
Cadherin_repeat 379..481 CDD:206637 21/103 (20%)
Cadherin_repeat 489..586 CDD:206637 30/96 (31%)
Cadherin_repeat 594..703 CDD:206637 28/114 (25%)
Cadherin_repeat 724..801 CDD:206637 14/96 (15%)
EGF_CA 977..1010 CDD:238011 6/32 (19%)
LamG 1013..1198 CDD:238058 21/101 (21%)
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
pcdh2ab11NP_001009590.2 Cadherin_2 28..108 CDD:311943 24/84 (29%)
Cadherin_repeat 137..236 CDD:206637 25/110 (23%)
Cadherin_repeat 245..344 CDD:206637 39/225 (17%)
Cadherin_repeat 356..449 CDD:206637 30/92 (33%)
Cadherin_repeat 457..558 CDD:206637 27/111 (24%)
Cadherin_repeat 576..659 CDD:206637 14/97 (14%)
Cadherin_C_2 686..758 CDD:318652 12/80 (15%)
Cadherin_tail 795..912 CDD:318236 27/165 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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