DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and cdh5

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001003983.1 Gene:cdh5 / 445471 ZFINID:ZDB-GENE-040816-1 Length:767 Species:Danio rerio


Alignment Length:772 Identity:187/772 - (24%)
Similarity:292/772 - (37%) Gaps:183/772 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 YFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFA---QDEGGEGLVGYA 236
            |.|.|.|      |..||.:. ..|||.||..|||:     .|..:.:.|   ....||.:....
Zfish    87 YILKGDG------AKDKFGVT-DNGDIVVLAKLDRE-----TQSVYNLSASLLNIHTGELVDKDE 139

  Fly   237 DIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEE 301
            ...:.:.|||||.|.|... ..|:::|:..||:::|.:.|.|.|| :.:.|.::.:.:       
Zfish   140 SFVIVVLDINDNIP
VFDSD-QSGSISESSRAGTTIMKVKATDADD-SSTENGRIDFKL------- 195

  Fly   302 ETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDG----GGLKGTGTASIRVKDLNDMPP 362
            ..|..:|:|:|...|| .....||||:...|.|.|.|.|.    .|...|...:|.:||:||...
Zfish   196 LNGTDLFKIKPNGDLI-ALKSDLDREKQSQYLIAVQAKDMPEHLTGNSATTVVTINIKDINDNIA 259

  Fly   363 QFTKDEWVTEVDETNGTYIPETPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRNGDGTGSL 427
            .|.|:.:...|.|   ...|.:.|..:.|:|:||...........|.|. |.|.:.|..:..|.|
Zfish   260 TFKKERYQFTVKE---DLKPGSEIGLLEVEDKDEIQNKDPTFALQSKFN-DVFDIKRTKEKDGML 320

  Fly   428 KIIQPLDYEDPLQSSGFRFRIQVND----KGDDGPGGSDKYHVAYSWVVVKLRDINDNVPKFDRE 488
            .:..|||||   :....:|.:.|.:    :..|..|     .:..:.|::.:.|: |..|.|::.
Zfish   321 SLKVPLDYE---KEKTHKFIVIVEEHTVSRTPDNKG-----LLKRTEVIIDVTDV-DEPPIFNQT 376

  Fly   489 HIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAISD----------RGAVS 543
            ....|::|......::....|.|.|     ..:|||        ::.|.|          .|.:|
Zfish   377 EYTFSVFEGPFKNPVIGAVSAKDPD-----SASYKI--------RYTIEDANCPVDVDPVNGYLS 428

  Fly   544 IQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVSGKKIL 608
            ::|.||||.:..:..|:.|.:|......::..:::.|.|:|||||.........:.||.....|:
Zfish   429 LKRTLDREQESLYTFQVTAHEDVLNGLKSSTMVSLKVLDINDNAPELTNGSYVYVCENDKPNTII 493

  Fly   609 -EVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGVAIISSLRPFDREAQKS 672
             .:.|.|.|:    |.|.|.|.|...:|:     |.: ||   :.:|...|:.....|..|..:.
Zfish   494 GTIGASDKDE----NSGRFRFTLARKSSN-----FSL-YD---NQDNTATIVLKQGGFSTENSEE 545

  Fly   673 YAIPIEIKDNGAP---------------------------AMTGTST-------------LTVTI 697
            |.:.|||.|.|.|                           |.||.|.             |.:.|
Zfish   546 YVLEIEIADGGTPEQKSVNLLQIKVCTCQSGRRVEYCMSYARTGMSVSALLAILLCIITILVIVI 610

  Fly   698 GDVNDNKMQPGSKSVLVYNYQGQSQDTPI-------GRVYVNDPDDWDVP-------DKKY---- 744
            ..|...:.|   |.|||....|:..:..:       |.:   |.:.:||.       |..:    
Zfish   611 LIVLRRRYQ---KEVLVTKASGEIHEQLVRYDEEGGGEM---DTNGYDVSILSSACHDSSFRPSV 669

  Fly   745 ----YWEVQEHQRFKLDTDTGILTMRAGTRRGRYQLRFKVYDREH-----GQEDIPANLSVTVRD 800
                |..|::....|.|....|...:....|.|..:   .||..|     |.|.:..:||     
Zfish   670 GPALYAMVKKPPACKGDMAMMIEVKKDEADRDRDGI---PYDTLHIYGYEGTESLAGSLS----- 726

  Fly   801 ITAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSKLERFRNKLAELLYTDRDNVD 857
             :.::.....::      |.||:..|.|           |||. ||:|...|..:.|
Zfish   727 -SLDSSSSGSNL------DYDFIHEWGP-----------RFRT-LAQLYGVDGSDSD 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 22/75 (29%)
Cadherin_repeat 256..359 CDD:206637 30/106 (28%)
Cadherin_repeat 379..481 CDD:206637 24/105 (23%)
Cadherin_repeat 489..586 CDD:206637 23/106 (22%)
Cadherin_repeat 594..703 CDD:206637 33/149 (22%)
Cadherin_repeat 724..801 CDD:206637 19/103 (18%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
cdh5NP_001003983.1 CA 86..153 CDD:214520 24/77 (31%)
Cadherin_repeat 160..257 CDD:206637 31/105 (30%)
Cadherin_repeat 266..369 CDD:206637 26/115 (23%)
Cadherin_repeat 377..471 CDD:206637 23/106 (22%)
Cadherin_repeat 480..571 CDD:206637 26/103 (25%)
Cadherin_C 619..757 CDD:366437 36/170 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.100

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