DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and Fat4

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_006232354.2 Gene:Fat4 / 310341 RGDID:1564291 Length:4981 Species:Rattus norvegicus


Alignment Length:2105 Identity:466/2105 - (22%)
Similarity:743/2105 - (35%) Gaps:581/2105 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 VRIGIADKNDSPPYFDRFLYETEIDENADLQSTVLTVNAKDHNESTNI--RYQITGGNIGNAFAV 84
            |.|.:.|:||:.|.|.: ::...:.||:.|..||..|...|.:...|.  ||.|  .:....|.:
  Rat  2761 VIISVLDENDNAPRFSQ-IFSAYVSENSPLGYTVTRVTTSDEDIGINAISRYSI--ADTALPFTI 2822

  Fly    85 QNTTGVIYVASPLDYETRPRYELRLEATRNRKNNYTTVVINVRDVNDNPPVFDRQTYR---TQIT 146
            ...||.|.::.||:.|...||.:|:.|..:.....|.|.|.|.|:|||.|.|.|.:|.   .::|
  Rat  2823 NPNTGDIVISRPLNREDTDRYRIRVSAHDSGWTVSTDVTIFVTDINDNTPRFSRPSYYLDCPELT 2887

  Fly   147 EEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQ 211
            |     |..|:.||:|||.|......:.||:..:        :..|.||.|||:||..:.|....
  Rat  2888 E-----LGSRVTQVSATDPDEGSNGQVFYFIKSK--------SEYFRINATTGEIFNKQVLKYQN 2939

  Fly   212 PNGRP-----QWRFTVFAQDEGGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSV 271
            .:|..     :..|.|.|.|.|...|:....:.:|..|.|||.|||.:..||..||:|...|:.:
  Rat  2940 VSGFSNVNINRHSFIVTASDRGNPSLLSETTVTINTVDSNDNPPQFLKNKYFTPVTKNVKVGTKL 3004

  Fly   272 MTMSAVDYDD----------------------PNE----STNAKLIYSIEKN------------- 297
            :.::|||..|                      .|:    |..:.|:..:.:|             
  Rat  3005 IKVTAVDDKDFGLNSEVEYFVSNGNHLGKFKLDNDTGWISIASSLVSDLNQNFFIRVTAKDKGNP 3069

  Fly   298 -----------VIEEETGAP--------------------------------------------- 306
                       |.||....|                                             
  Rat  3070 PLSSQVVIHITVTEENYHTPEFSQSHISATIPESHSIGSVVRTVSARDRDTAMNGLISYNISSGN 3134

  Fly   307 ---IFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMDGGGLKGTGTASIRVK--DLNDMPPQFTK 366
               ||.|...||:: |....||.|.:..:.:.:.|.|||.:..||..|:.|.  |:||..|.|..
  Rat  3135 EEGIFAINSSTGVV-TLAKALDYELSSKHEMTISATDGGWVARTGYCSLTVSVIDVNDNSPVFVP 3198

  Fly   367 DEWVTEVDET--NGTYI-------------------------------PETPILTV--------- 389
            ||:...|.|.  :||.:                               |.|.::|.         
  Rat  3199 DEFFPTVMENAPSGTTVIHLNATDADSGANAVIAYTVQSSDSDLFVIDPNTGVITTQGFLDFETK 3263

  Fly   390 ----------TVQDEDE------------TNTFQYKVV------------PNSGFGADKFAMVRN 420
                      .|.||::            ||.:..:.|            |......:.||..|:
  Rat  3264 QSYHLTVKAFNVPDEEKCSFATVNIQLMGTNEYVPRFVSKLYYFEVSEAAPRGTAVGEVFASDRD 3328

  Fly   421 --GDG--------------------TGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDDGPGGSDK 463
              .||                    ||.:.:...||.|     ...|..::|..|......|:|.
  Rat  3329 MGADGEVHYLIFGNSRKKGFQIHKMTGQIYVSGLLDRE-----KEERVSLKVLAKNFGNIRGADI 3388

  Fly   464 YHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQ-GGHSKVAYKIVRS 527
            ..|.   |.:.:.|.|| .|.|......|.|.|...:||.:....|.|:|. ...|:.:| .:.|
  Rat  3389 DEVT---VNITVLDAND-PPVFSLNTYRVQISEGVPIGTHVTFVSAFDSDSIPSWSRFSY-FIGS 3448

  Fly   528 TNRKRQFAISDR-GAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTFA 591
            .|....|:|:.: |.:::...||||:...:::.:||:|.|:|:.|.:|:|.|.::|:|||.|...
  Rat  3449 GNENGAFSINPQTGQITVTSGLDRESLPVYNLTVLAVDSGTPSATGSASLLVTLEDINDNGPVLT 3513

  Fly   592 QDYKPTLPENVSGKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDNENGV 656
            ......|.....|..::.:.:.|||  |..|.|||.:.|       :..|....|    .:.|..
  Rat  3514 VSEGEVLENKRPGTLVMTLQSTDPD--LPPNQGPFNYYL-------LSTGPATNY----FSLNTA 3565

  Fly   657 AIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQGQS 721
            .::|:.|..|||....:.:.:..:|:|||.|:.|.|:.:|:.|.|||..|..:..:.|..|....
  Rat  3566 GVLSTTREIDREQIADFYLSVVTRDSGAPQMSSTGTVHITVLDQNDNPSQSRTVEIFVNYYGNLF 3630

  Fly   722 QDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTGI------------LTMRAGTRRGRY 774
            ....:|.|...|||..|              .|.....:|:            |:.:..:..|.:
  Rat  3631 PGGTLGSVKPQDPDVLD--------------SFHCSLTSGVTSLFSIPAGSCDLSSQPRSTDGTF 3681

  Fly   775 QLRFKVYDREHGQEDIPANLSVTVRDITAEAVQQAGSMRLSHITDEDFV---------------- 823
            .|.....|..|  ..:..|:.|.....:...:..:..:|:...|.:||:                
  Rat  3682 DLTVVSSDGVH--STVTNNIRVFFAGFSNATIDNSILLRVGVPTVKDFLTNHYLHFLRIASSQLT 3744

  Fly   824 ----------------RTW--NPVK---NQ-VEPSKLERFRNKLAELLYTDRDNVDVFSV----- 861
                            ||:  ..||   || |.||.:..|...:.|:|.. :..|.|.||     
  Rat  3745 GLGTAVQLYAAYEENNRTFLLAAVKRNHNQYVNPSGVATFFESIKEILLR-QSGVKVESVDHDPC 3808

  Fly   862 -------------QLKEGSPYPLTD---VHFAARSATQQPYFKAVRLNGVVQMHREEIEKDVGLN 910
                         :|..||...:.:   |...|....|.  |:...:.|......|         
  Rat  3809 IHAPCQNGGSCLRRLAVGSALKIQESLPVIIVANEPLQP--FQCKCVPGYAGSWCE--------- 3862

  Fly   911 ITMVNINECL----HEGKGKC----GSNSCTSKVELGKKPYTVSVN-------RTALVGVRLDIS 960
               |:|:|||    |.| |.|    |..||:.......:.....:|       :...|.......
  Rat  3863 ---VDIDECLPAPCHNG-GTCHNLVGGFSCSCSEGFTGRACERDINECLPSPCKHGAVCQNFPGG 3923

  Fly   961 AQCVCRARNFT-----HQDHNCRTHLCYNGGRCVETRNGPKCVACPVGYNGPRCQQSTRSFRGNG 1020
            ..|||:. .:|     ...:.|..:.|:|||.|........| .||.|..|..|:.::..|....
  Rat  3924 FNCVCKT-GYTGKMCESSVNYCECNPCFNGGSCQSGVESYYC-HCPFGVFGKHCELNSYGFEELS 3986

  Fly  1021 WAWYPPLQLCQESHLSLEFITRVADGLILYNGPIVPPKPEET-VISDFIALELEQGYPRLLIDFG 1084
            :..:|.|. ...:::.::|.|..:..|:|||      ...:| ..::|:|||:.:...|...:.|
  Rat  3987 YMEFPSLD-PNNNYIYVKFATIKSHALLLYN------YDNQTGERAEFLALEIAEERLRFSYNLG 4044

  Fly  1085 SGTLELRVKTKKTLDDGVWHRL---------DIFWDTENVRMVVDFCRTALVSEMEDGTPPEFDD 1140
            |||.:|  .|.|.:.||.:|.:         .:..|:.:......:|..:.|:..:|.| .:...
  Rat  4045 SGTYKL--TTMKKVSDGQFHTVIARRAGMAASLTVDSCSENQEPGYCTVSNVAVSDDWT-LDVQP 4106

  Fly  1141 NACQARGQIPPFAESLNLNQPLQLGGLYRQHFDQTLYNWQYAFSSKGFDGCIRNVIHNSEHYDLA 1205
            |.....|       ..:|...||..|....|               .|.|||.....|....:.:
  Rat  4107 NRVTVGG-------IRSLEPILQRKGHVESH---------------DFVGCIMEFAVNGRPLEPS 4149

  Fly  1206 FPALARNSFPACPQTDEVCLKTEHTARCWEHGNCVASLVQAKCHCQPGWMGPGCNVPTIPTT--- 1267
            ....|:.....||:.:..|.:..    |...|.||......:|.|..|..|..|.....|.|   
  Rat  4150 QALAAQGILDQCPRLEGTCARNP----CQHGGTCVDFWSWQQCQCMEGLTGKYCEKSVTPDTALS 4210

  Fly  1268 ---------FKAQSYVKFALSFEPDRFST-------QLQLRFRTREQGGELFRVSDQHHREYAIL 1316
                     ..:||..:..|..:..|.:|       .|:::||||.:.|.|..:  |....|..:
  Rat  4211 LEGKGRLDYHMSQSEKREYLLTQSIREATLEPFGVNSLEVKFRTRSENGILIHI--QESSNYTTV 4273

  Fly  1317 ELRRGHLQFRYNLNSMRNEEQLLTLTAIAVNDGQWHVIRISRYGSAALMELDGGESRRYNESFH- 1380
            :::.|.:.|..:.......|:::....:|  ||.||..|||:.||:.::.:|...||   :..| 
  Rat  4274 KIKNGKVHFTSDAGVAGKVERIIPEAYVA--DGHWHTFRISKNGSSTVLSVDRTHSR---DVVHP 4333

  Fly  1381 ---FTGHQWLTIDKQEGVYAGGKAEYTGIKTFEVQSDFQ---RSCLDDIRLDGKHLPLPPAMNGT 1439
               |.|.:.|::            ...||...:...|.|   ..|:..:...|:.||..      
  Rat  4334 TQDFGGIEVLSM------------SLGGIPPNQAHRDTQTGFNGCIASVLYGGESLPFS------ 4380

  Fly  1440 QWGQATMAR------NLERNCPSNRPCSNVICPDPFDCVDLWNEYECTCSEGRIMSSDTKGCVDR 1498
              |:.::|.      :::..|.....|::..|.....|::.|..|:               ||..
  Rat  4381 --GKHSLASISKTDPSVKIGCRGPNICASNPCWGDLLCINQWYAYK---------------CVPP 4428

  Fly  1499 NECLDLPCLNGATCINLEPRL--RYRCICPEGYWGENCELV------------------------ 1537
            .:|...||.||.:|   ||.|  .|.|.|||.:.|..||.|                        
  Rat  4429 GDCASHPCQNGGSC---EPGLLSGYTCSCPESHTGRTCETVVACLGVLCPQGKVCKAGSPGGHVC 4490

  Fly  1538 ---QEGQRLKLSMGALGAIF-VCLIIILILALIFVLYS----------RKRKTTKKKKRSGPEKD 1588
               |....:.|.:.|:.||. .|...:.:|.|..:|.:          ::.|..|:||:.|.|. 
  Rat  4491 VQSQGPDEISLPLWAVPAIVGSCATALALLVLSLILCNQCRGKMPKNPKEEKKPKEKKKKGSEN- 4554

  Fly  1589 VRETVISYEDEGG----GEDDMTAFDITPLQIPISAQGGP-PDIAACKMPIIYPVMTLLPPGQEL 1648
                 ::::|...    |:|         |.:....:|.| |||...:.|.:....|.:|...| 
  Rat  4555 -----VAFDDPDNIPPYGDD---------LAVRKQPEGNPKPDIIERENPYLIFDETDIPHNSE- 4604

  Fly  1649 NVAYLMEERKQRIDKDNNAPPFDDLRNFTFEGSGSIAESLSSLASGTDDENQDFNYLQNWGPRFN 1713
                       .|.....|.|..::.::..:.:.|||.|.:.:.       |.:...::..|:| 
  Rat  4605 -----------TIPSAPLASPEQEIEHYDIDNASSIAPSDADII-------QHYKQFRSHTPKF- 4650

  Fly  1714 ALAAMYVHDKAKASSQLPSDGGGGS 1738
               ::..|.....:.|.|...|..|
  Rat  4651 ---SIQRHSPLGFARQSPMPLGASS 4672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 28/92 (30%)
Cadherin_repeat 140..248 CDD:206637 32/115 (28%)
Cadherin_repeat 256..359 CDD:206637 36/202 (18%)
Cadherin_repeat 379..481 CDD:206637 30/197 (15%)
Cadherin_repeat 489..586 CDD:206637 30/98 (31%)
Cadherin_repeat 594..703 CDD:206637 29/108 (27%)
Cadherin_repeat 724..801 CDD:206637 15/88 (17%)
EGF_CA 977..1010 CDD:238011 11/32 (34%)
LamG 1013..1198 CDD:238058 41/194 (21%)
EGF_2 <1233..1259 CDD:285248 8/25 (32%)
Laminin_G_2 1293..1428 CDD:280389 33/141 (23%)
EGF_CA 1497..1535 CDD:238011 15/39 (38%)
Cadherin_C 1583..1719 CDD:279398 25/140 (18%)
Fat4XP_006232354.2 Cadherin_repeat 48..131 CDD:206637
Cadherin_repeat 139..246 CDD:206637
Cadherin_repeat 254..349 CDD:206637
Cadherin_repeat 364..471 CDD:206637
Cadherin_repeat 479..577 CDD:206637
Cadherin_repeat 588..685 CDD:206637
Cadherin_repeat 693..789 CDD:206637
Cadherin_repeat 798..889 CDD:206637
Cadherin_repeat 904..992 CDD:206637
Cadherin_repeat 1000..1096 CDD:206637
Cadherin_repeat 1105..1206 CDD:206637
Cadherin_repeat 1215..1311 CDD:206637
Cadherin_repeat 1321..1416 CDD:206637
Cadherin_repeat 1428..1525 CDD:206637
Cadherin_repeat 1540..1622 CDD:206637
Cadherin_repeat 1634..1736 CDD:206637
Cadherin_repeat 1747..1837 CDD:206637
Cadherin_repeat 1845..1940 CDD:206637
Cadherin_repeat 1948..2047 CDD:206637
Cadherin_repeat 2057..2150 CDD:206637
Cadherin_repeat 2159..2254 CDD:206637
Cadherin_repeat 2263..2360 CDD:206637
Cadherin_repeat 2369..>2443 CDD:206637
Cadherin_repeat 2472..2559 CDD:206637
Cadherin_repeat 2573..2667 CDD:206637
Cadherin_repeat 2675..2771 CDD:206637 4/9 (44%)
Cadherin_repeat 2778..2870 CDD:206637 28/93 (30%)
Cadherin_repeat 2878..2981 CDD:206637 32/115 (28%)
Cadherin_repeat 2990..3085 CDD:206637 16/94 (17%)
Cadherin_repeat 3095..3192 CDD:206637 19/97 (20%)
Cadherin_repeat 3200..3295 CDD:206637 12/94 (13%)
Cadherin_repeat 3305..3402 CDD:206637 19/104 (18%)
Cadherin_repeat 3410..3508 CDD:206637 30/98 (31%)
Cadherin_repeat 3516..3612 CDD:206637 29/108 (27%)
EGF_CA 3804..3862 CDD:238011 8/59 (14%)
EGF_CA 3864..3900 CDD:238011 11/36 (31%)
EGF_CA 3902..3938 CDD:238011 6/36 (17%)
EGF_CA 3941..3976 CDD:238011 11/35 (31%)
LamG 3979..4142 CDD:238058 41/194 (21%)
EGF_CA 4168..4200 CDD:238011 9/35 (26%)
Laminin_G_2 4252..4375 CDD:396680 33/141 (23%)
EGF_CA 4430..4464 CDD:238011 15/36 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100175
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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