DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and Cdh5

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:XP_038953616.1 Gene:Cdh5 / 307618 RGDID:1307370 Length:777 Species:Rattus norvegicus


Alignment Length:831 Identity:212/831 - (25%)
Similarity:341/831 - (41%) Gaps:202/831 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   134 PVFDRQT-----YRTQITEEDDRNLPKRILQVTATDGDVDRPINIVYFLTGQGIDPDNPANSKFD 193
            ||..||.     .:..|.||.:.:||..:.::.:   :|:|. |..|.|.|:      .|...|.
  Rat    30 PVHQRQKRDWIWNQMHIDEEKNESLPHYVGKIKS---NVNRQ-NAKYVLQGE------QAGKIFR 84

  Fly   194 INRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQD-EGGEGLVGYADIQVNLKDINDNAPQFPQGIY 257
            ::..|||:...:.|||::.:   ::..|....| :..:.|...:...|.:.|:|||.|.|...::
  Rat    85 VDADTGDVLAYERLDREKVS---EYFLTALIVDKKTNKNLEQPSSFTVKVHDVNDNWPVFTHQVF 146

  Fly   258 FGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVC 322
            ..:|.|....|:||:.::|.|.|||..:.:|.::|.:.|       |...|.|: .:|||.|...
  Rat   147 NASVPEMSAIGTSVIRVTATDADDPTVAGHATVLYQMVK-------GNEYFAID-NSGLIFTKDK 203

  Fly   323 CLDRERTPDYSIQVVAMDGGGLK---GTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPE- 383
            .||||...:|.|.|.|.|..||:   ||.|..||::|:||..|.||:..:...|        || 
  Rat   204 NLDRETRAEYKIVVEAQDAQGLRGESGTATVLIRLEDINDNFPIFTQSTYTFSV--------PED 260

  Fly   384 ----TPILTVTVQDEDETNTFQYKVVPNSGFGADKFAMVRNGD-GTGSLKIIQPLDYEDPLQSSG 443
                .|:.:::|:|.||......|.....|...|.|.:..:.| ..|.:|..:|||||...|   
  Rat   261 IRVGKPLGSLSVEDPDEPQNRMTKYSIMQGEYRDTFTIETDPDRNEGIIKPTKPLDYELIQQ--- 322

  Fly   444 FRFRIQVNDKGD-----DGPGGSDKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTK---V 500
            :.|.|:..|...     ....|.:|     :.:::.:.|: |..|.|.|......:.|:.|   :
  Rat   323 YTFHIEATDPTIRLGYLSSTAGKNK-----AKIIINVLDV-DEPPVFQRRFYHFHLPENKKKPLI 381

  Fly   501 GTILEQFKATDADQGGHSKVAYKIVRSTNRKRQFAISDRGAVSIQRPLDRETQDRHHIQILA--I 563
            ||::    |.|.|:...| :.|.|.::::|.:.|.|:.:|.:..::.|||||...:::.:.|  :
  Rat   382 GTVV----AKDPDKAQRS-IGYSIRKTSDRGQYFRITKQGNIYNEKELDRETHAWYNLTVEANEL 441

  Fly   564 DD-GSP-ARTATATLTVIVKDVNDNAPTFAQDYKPTLPENVS-GKKILEVAAKDPDDRLRGNGGP 625
            |. |:| .:.:...:.:.|.|.|||||.|||.|:|.:.||.: ||.:::::|.|.|         
  Rat   442 DSRGNPVGKESIVQIYIEVLDENDNAPEFAQPYEPKVCENAAQGKLVVQISATDKD--------- 497

  Fly   626 FTFRLDPLASDEIKAGFKVE---YDRRGDNENGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAM 687
                :.|: :.:.|...|.|   :....:::|...|......|:||..|.:.:|:.|.|||.|::
  Rat   498 ----VVPV-NTKFKFALKNEDSNFTLINNHDNTANITVKYGQFNREHTKFHYLPVLISDNGMPSL 557

  Fly   688 TGTSTLTVTIGDVNDN---------KMQPG----------------------------------- 708
            |||.||||.:...|:.         ..|.|                                   
  Rat   558 TGTGTLTVAVCKCNEQGEFTFCEEMAAQAGVSIQALVAIFLCILTITAVITLLIFLRRRLRKQAH 622

  Fly   709 --SKSVLVYNYQGQSQDTPIGRVYVNDPDDWDVP-----------------DKK--YYWEVQEHQ 752
              |||.|..:.|..:.|...|...  |...:||.                 |.:  .|.:||:..
  Rat   623 AHSKSALEIHEQLVTYDEEGGGEM--DTTSYDVSVLNSVRTGSNKPLRSTMDARPAVYTQVQKPP 685

  Fly   753 RFKLDTDTGILTMRAGTRRGRYQLRFK-----------VYDREH-----GQEDIPANLSVTVRDI 801
            |.       ..::..|.|.....:..|           .||..|     |.|.|           
  Rat   686 RL-------APSLHGGPREMATMIEVKKEEADNDGGGPPYDTLHIYGYEGTESI----------- 732

  Fly   802 TAEAVQQAGSMRLSHITDEDFVRTWNPVKNQVEPSKLERFRNKLAELLYTD 852
             ||::....:.......|.||:..|.|           ||: .||||..:|
  Rat   733 -AESLSSLSTNSSDSDIDYDFLNDWGP-----------RFK-MLAELYGSD 770

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 25/113 (22%)
Cadherin_repeat 256..359 CDD:206637 37/105 (35%)
Cadherin_repeat 379..481 CDD:206637 26/112 (23%)
Cadherin_repeat 489..586 CDD:206637 26/103 (25%)
Cadherin_repeat 594..703 CDD:206637 33/112 (29%)
Cadherin_repeat 724..801 CDD:206637 18/111 (16%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Cdh5XP_038953616.1 CA 69..139 CDD:214520 20/78 (26%)
Cadherin_repeat 145..244 CDD:206637 38/106 (36%)
Cadherin_repeat 252..359 CDD:206637 27/123 (22%)
Cadherin_repeat 368..466 CDD:206637 26/102 (25%)
Cadherin_repeat 473..568 CDD:206637 32/108 (30%)
Cadherin_C 619..770 CDD:395833 37/183 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I9369
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.100

Return to query results.
Submit another query.