DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CadN2 and Cdh7

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_001012755.1 Gene:Cdh7 / 29162 RGDID:1306856 Length:785 Species:Rattus norvegicus


Alignment Length:746 Identity:213/746 - (28%)
Similarity:340/746 - (45%) Gaps:157/746 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   158 LQVTATDGDVDRPINIV-YFLTGQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFT 221
            |.|.....|||:....: |.|:|:|      |:|.|.|:..||||...|.|||::     |..:|
  Rat    66 LYVGKLHSDVDKGDGFIKYILSGEG------ASSIFIIDENTGDIHATKRLDREE-----QAYYT 119

  Fly   222 VFAQ--DE-GGEGLVGYADIQVNLKDINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPN 283
            :.||  |. ..:.:...::..:.::|||||.|:|..|.|...|.|....|:||:.::|.|.|||.
  Rat   120 LRAQALDRLTNKPVEPESEFVIKIQDINDNEPKFLDGPYTAGVPEMSPVGTSVVQVTATDADDPT 184

  Fly   284 ESTNAKLIYSIEKNVIEEETGAPIFEIEPETGLIKTAVCCLDRERTPDYSIQVVAMD----GGGL 344
            ...:|:::|||.:       |.|.|.:||:||:||||:..:|||....|.:.:.|.|    .|||
  Rat   185 YGNSARVVYSILQ-------GQPYFSVEPKTGVIKTALPNMDREAKDQYLLVIQAKDMVGQNGGL 242

  Fly   345 KGTGTASIRVKDLNDMPPQFTKDEWVTEVDETNGTYIPET-PILTVTVQ------DEDETNTFQY 402
            .||.:.::.:.|:||.||:|.:..:     :.||   ||: |:.:|..:      |.......:|
  Rat   243 SGTTSVTVTLTDVNDNPPRFPRRSY-----QYNG---PESLPVASVVARIKAADADIGVNAEMEY 299

  Fly   403 KVVPNSGFGADKFAMVRNGDGTGSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD------GPGGS 461
            |:|...|.|..|.:..::.. .|.:.|.:.||:|   ..:.:..||:..::..|      || .|
  Rat   300 KIVDGDGLGIFKISPDKDTQ-EGIITIQKELDFE---AKTSYTLRIEAANRDADPRFLSLGP-FS 359

  Fly   462 DKYHVAYSWVVVKLRDINDNVPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR 526
            |.     :.|.:.:.|: |..|.|......:.:.|.|:||.|:....|.|.| ..:|.|.|.|.|
  Rat   360 DT-----TTVKIIVEDV-DEPPVFSSPLYPMEVSEATQVGHIIGTVAAHDPD-SSNSPVRYSIDR 417

  Fly   527 STNRKRQFAI-SDRGAVSIQRPLDRETQDRHHIQILAIDDGSPARTATATLTVIVKDVNDNAPTF 590
            :|:.:|.|.| ::.|.::..:.|||||...|:|.:||::..:|::.....:.:.:.|:|||||.|
  Rat   418 NTDLERYFNIDANSGIITTAKSLDRETNPVHNITVLAMESQNPSQVGRGYVAITILDINDNAPEF 482

  Fly   591 AQDYKPTLPENVS-GKKILEVAAKDPDDRLRGNGGPFTFRLDPLASDEIKAGFKVEYDRRGDN-E 653
            |.||:.|:.||.. |:.|.:::|.|.|:  ..||..|.|.|....::.:.:..|       || :
  Rat   483 AMDYETTVCENAQPGQVIQKISAIDKDE--PSNGHQFYFSLTTDMANNLNSSLK-------DNKD 538

  Fly   654 NGVAIISSLRPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVLVYNYQ 718
            |..:|::....|.|:.|..|.:||.|.|||:|:::.|:|||:.:.|.:.:.        :.....
  Rat   539 NTASILTRRNGFRRQEQSVYYLPIFIVDNGSPSLSSTNTLTIRVCDCDADG--------IAQTCN 595

  Fly   719 GQSQDTPIGRVYVNDPDDWDVPDKKYYWEVQEHQRFKLDTDTG------------------ILTM 765
            .::...|.|                              ..||                  |:||
  Rat   596 AEAYILPAG------------------------------LSTGALIAILACVLTLLVLILLIVTM 630

  Fly   766 RAGTRRGRYQLRFKV----------YDRE-HGQEDIPA-------NLSV-----TVRDITAEAVQ 807
            :   ||.:..|.|..          ||.| .|:||..|       ||:|     |.||:|.| :|
  Rat   631 K---RRKKEPLIFDEERDIRENIVRYDDEGGGEEDTEAFDMAALRNLNVVRDTKTRRDVTPE-IQ 691

  Fly   808 QAGSMRLSHITDEDFVR--TWNPVKN-QVEP 835
            ........:|.|....|  .|..:|. .|:|
  Rat   692 FLSRPTFKNIPDNVIFREFIWERLKEADVDP 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637
Cadherin_repeat 140..248 CDD:206637 29/93 (31%)
Cadherin_repeat 256..359 CDD:206637 38/106 (36%)
Cadherin_repeat 379..481 CDD:206637 25/114 (22%)
Cadherin_repeat 489..586 CDD:206637 30/97 (31%)
Cadherin_repeat 594..703 CDD:206637 35/110 (32%)
Cadherin_repeat 724..801 CDD:206637 23/117 (20%)
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Cdh7NP_001012755.1 CA 73..151 CDD:214520 29/88 (33%)
Cadherin_repeat 157..258 CDD:206637 39/107 (36%)
Cadherin_repeat 266..373 CDD:206637 27/125 (22%)
Cadherin_repeat 382..478 CDD:206637 30/96 (31%)
Cadherin_repeat 486..584 CDD:206637 34/106 (32%)
Cadherin_C 639..777 CDD:279398 24/85 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 130 1.000 Domainoid score I5067
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR24027
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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