DRSC/TRiP Functional Genomics Resources

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Protein Alignment CadN2 and Cdh13

DIOPT Version :9

Sequence 1:NP_001036368.2 Gene:CadN2 / 35071 FlyBaseID:FBgn0262018 Length:1799 Species:Drosophila melanogaster
Sequence 2:NP_620244.1 Gene:Cdh13 / 192248 RGDID:619745 Length:714 Species:Rattus norvegicus


Alignment Length:766 Identity:212/766 - (27%)
Similarity:329/766 - (42%) Gaps:143/766 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VLTNSTYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADL--QSTVLTVNAKDHNESTNIRYQ 72
            ||.:...|||     ...|.:.:|.:..:.|:   |.:.|:.  ...||.:...|...:..:.|:
  Rat    11 VLLSQVLLVT-----SAGDLDCTPGFQQKVLH---IHQPAEFIEDQPVLNLTFSDCKGNKKLHYE 67

  Fly    73 ITG-----GNIGNAFAVQNTTGV---IYVASPLDYETRPRYELRLEATRNRKNNYTTVVINVRDV 129
            ::.     .:.|...||:|.|.|   ::|     :...|..|...|          .|::..:|:
  Rat    68 VSSPYFKVNSDGTLVAVRNITAVGRTLFV-----HARTPHAEDMAE----------LVIVGGKDI 117

  Fly   130 NDN-PPVFDRQTYRTQ---------------ITEEDDRNLPKRILQVTATDGDVDRPINIVYFLT 178
            ..: ..:|  :..||.               |.|...:..|:.:.:|.    |.|||....:.||
  Rat   118 QGSLQDIF--KFARTSPVPRQKRSIVVSPILIPENQRQPFPRDVGKVV----DSDRPEGSKFRLT 176

  Fly   179 GQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLK 243
            |:|:|.|  ....|.||..||.:.|.:.|||:.   ...::..|...|..|..|.|...::|.:.
  Rat   177 GKGVDQD--PKGTFRINENTGSVSVTRTLDRET---IATYQLFVETTDASGRTLEGPVPLEVIVI 236

  Fly   244 DINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIF 308
            |.|||.|.|.:|.|.|:|.|....|::||.|:|.|.||| .:.||.|.|:|.:.. .::....:|
  Rat   237 DQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDP-ATDNALLRYNIRQQT-PDKPSPNMF 299

  Fly   309 EIEPETGLIKTAV--CCLDRE--RTPDYSIQVVAMDGG----GLKGTGTASIRVKDLNDMPPQFT 365
            .|:||.|.|.|.|  ..||||  ..|.|.:.:.|.|..    ||.||.||:|.:.|.||..|:||
  Rat   300 YIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDDKNDHSPKFT 364

  Fly   366 KDEWVTEVDE-TNGTYIPETPILTVTVQDEDETNT----FQYKVVPNSGFGADKFAMVRNGD-GT 424
            |.|:...|:| ..|.      |:.:||:|:|:..|    ..|.::  :|.....|.:..|.. ..
  Rat   365 KKEFQATVEEGAVGV------IVNLTVEDKDDPATGAWRAAYTII--NGNPGQSFEIHTNPQTNE 421

  Fly   425 GSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD--------GPGGSDKYHVAYSWVVVKLRDINDN 481
            |.|.:::|||||    .|.|. .:.:..:.:|        ||..:...|:.       :.|:|:.
  Rat   422 GMLSVVKPLDYE----ISAFH-TLLIKVENEDPLVPDVSYGPSSTATVHIT-------VLDVNEG 474

  Fly   482 VPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR------STNRKRQFAISDRG 540
             |.|..:.:.|:..|:..||::|....|||.|...|..:.|.:.:      |.|       ...|
  Rat   475 -PVFYPDPMMVTKQENISVGSVLLTVNATDPDSLQHQTIRYSVYKDPAGWLSIN-------PING 531

  Fly   541 AVSIQRPLDRETQDRHH----IQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPEN 601
            .|.....||||:...|:    ...||||.|:|..|.|.||.:.::|||||||..    .||:.|.
  Rat   532 TVDTTAVLDRESPFVHNSVYTALFLAIDSGNPPATGTGTLMITLEDVNDNAPVI----YPTVAEV 592

  Fly   602 VSGKKILEV---AAKDPDDRLRGNGGPFTFRL-DPLASDEIKAGFKVEYDRRGDNENGVAIISSL 662
            ....:.|.|   .|.|.|  |..|..||.|.: .....|::....|:        .|..|::|.|
  Rat   593 CDDARNLSVVILGASDKD--LHPNTDPFKFEIHKQTVPDKVWKISKI--------NNTHALVSLL 647

  Fly   663 RPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVL 713
            :..::   .:|.:||.:.|:|.|.||..:.|.|.:....::|:...:...|
  Rat   648 QNLNK---ANYNLPIMVTDSGKPPMTNITDLRVQVCSCKNSKVDCNAAGTL 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CadN2NP_001036368.2 Cadherin_repeat 41..132 CDD:206637 18/100 (18%)
Cadherin_repeat 140..248 CDD:206637 33/122 (27%)
Cadherin_repeat 256..359 CDD:206637 42/110 (38%)
Cadherin_repeat 379..481 CDD:206637 25/114 (22%)
Cadherin_repeat 489..586 CDD:206637 33/106 (31%)
Cadherin_repeat 594..703 CDD:206637 29/112 (26%)
Cadherin_repeat 724..801 CDD:206637
EGF_CA 977..1010 CDD:238011
LamG 1013..1198 CDD:238058
EGF_2 <1233..1259 CDD:285248
Laminin_G_2 1293..1428 CDD:280389
EGF_CA 1497..1535 CDD:238011
Cadherin_C 1583..1719 CDD:279398
Cdh13NP_620244.1 Cadherin_pro 27..112 CDD:370101 19/102 (19%)
CA 161..243 CDD:214520 30/90 (33%)
Cadherin_repeat 249..359 CDD:206637 43/111 (39%)
Cadherin_repeat 367..473 CDD:206637 28/125 (22%)
Cadherin_repeat 488..581 CDD:206637 32/99 (32%)
Cadherin 590..680 CDD:356102 27/102 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24027
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.100

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