Sequence 1: | NP_001036368.2 | Gene: | CadN2 / 35071 | FlyBaseID: | FBgn0262018 | Length: | 1799 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_620244.1 | Gene: | Cdh13 / 192248 | RGDID: | 619745 | Length: | 714 | Species: | Rattus norvegicus |
Alignment Length: | 766 | Identity: | 212/766 - (27%) |
---|---|---|---|
Similarity: | 329/766 - (42%) | Gaps: | 143/766 - (18%) |
- Green bases have known domain annotations that are detailed below.
Fly 10 VLTNSTYLVTKFVRIGIADKNDSPPYFDRFLYETEIDENADL--QSTVLTVNAKDHNESTNIRYQ 72
Fly 73 ITG-----GNIGNAFAVQNTTGV---IYVASPLDYETRPRYELRLEATRNRKNNYTTVVINVRDV 129
Fly 130 NDN-PPVFDRQTYRTQ---------------ITEEDDRNLPKRILQVTATDGDVDRPINIVYFLT 178
Fly 179 GQGIDPDNPANSKFDINRTTGDIFVLKPLDRDQPNGRPQWRFTVFAQDEGGEGLVGYADIQVNLK 243
Fly 244 DINDNAPQFPQGIYFGNVTENGTAGSSVMTMSAVDYDDPNESTNAKLIYSIEKNVIEEETGAPIF 308
Fly 309 EIEPETGLIKTAV--CCLDRE--RTPDYSIQVVAMDGG----GLKGTGTASIRVKDLNDMPPQFT 365
Fly 366 KDEWVTEVDE-TNGTYIPETPILTVTVQDEDETNT----FQYKVVPNSGFGADKFAMVRNGD-GT 424
Fly 425 GSLKIIQPLDYEDPLQSSGFRFRIQVNDKGDD--------GPGGSDKYHVAYSWVVVKLRDINDN 481
Fly 482 VPKFDREHIEVSIYEDTKVGTILEQFKATDADQGGHSKVAYKIVR------STNRKRQFAISDRG 540
Fly 541 AVSIQRPLDRETQDRHH----IQILAIDDGSPARTATATLTVIVKDVNDNAPTFAQDYKPTLPEN 601
Fly 602 VSGKKILEV---AAKDPDDRLRGNGGPFTFRL-DPLASDEIKAGFKVEYDRRGDNENGVAIISSL 662
Fly 663 RPFDREAQKSYAIPIEIKDNGAPAMTGTSTLTVTIGDVNDNKMQPGSKSVL 713 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CadN2 | NP_001036368.2 | Cadherin_repeat | 41..132 | CDD:206637 | 18/100 (18%) |
Cadherin_repeat | 140..248 | CDD:206637 | 33/122 (27%) | ||
Cadherin_repeat | 256..359 | CDD:206637 | 42/110 (38%) | ||
Cadherin_repeat | 379..481 | CDD:206637 | 25/114 (22%) | ||
Cadherin_repeat | 489..586 | CDD:206637 | 33/106 (31%) | ||
Cadherin_repeat | 594..703 | CDD:206637 | 29/112 (26%) | ||
Cadherin_repeat | 724..801 | CDD:206637 | |||
EGF_CA | 977..1010 | CDD:238011 | |||
LamG | 1013..1198 | CDD:238058 | |||
EGF_2 | <1233..1259 | CDD:285248 | |||
Laminin_G_2 | 1293..1428 | CDD:280389 | |||
EGF_CA | 1497..1535 | CDD:238011 | |||
Cadherin_C | 1583..1719 | CDD:279398 | |||
Cdh13 | NP_620244.1 | Cadherin_pro | 27..112 | CDD:370101 | 19/102 (19%) |
CA | 161..243 | CDD:214520 | 30/90 (33%) | ||
Cadherin_repeat | 249..359 | CDD:206637 | 43/111 (39%) | ||
Cadherin_repeat | 367..473 | CDD:206637 | 28/125 (22%) | ||
Cadherin_repeat | 488..581 | CDD:206637 | 32/99 (32%) | ||
Cadherin | 590..680 | CDD:356102 | 27/102 (26%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR24027 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
2 | 2.100 |